LOC110530051 (LOC106568746)


Basic Information

Item Value
gene id LOC110530051
gene name LOC106568746
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51525267 ~ 51546934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612831.2
TCTGCTAACCATCTGCACCACAGAAAGGCGTGCTAGCTAGCAATAGCAATACTTTTTAGCACTGTAAAACTATATCAATAACAACGATGAAcgttacatgtttcaatagtctcacaccCCCTTATAACAGTACCTATAGCATTAACCCTGGGATGCTTTATTTATTTCACGTTATGGACTTCTACACAGGAGTAATCTGCAACACACCTTtctgtgttttctcggactgatGAGAATGGGAGCTACGGGTAGTACCAGGGTGTTAGTAGGTAACGTAGGCACCcagatgaaataaaatacatttaatgaaaTAAAAACCGAAGTTGTTAATATCATCCAGTTACTGTAGCTGCCTATTTAACATCAACCAGCAGCACTAGTTGAGCAACAATTGAAATGAGAAACCAAAATTAAAGTTCCTGGTGATCATAACGATCTGACTCCACCCTTCTGTCTGAACTTGGAATATTCCTGTTCGCAGGTTTGGGCCATTGATCCTCaacctggttgttctgttctgtGTTGTGTACTATTCTAATCATTTGAAGATTGATGGAATAACCCTTTTAACTCTCCTACATATGGGCTGACAAGAAATCAAGAAAATTAGAAATACTCTTAATAACGTTCTCAAAAATTGGATGAATAGAACCAAGTGTGAGAACCCCCTAAAACTCATGACAAGGCAACTTTAAAGCTTCCTGATTATAGTAGTTTCCTGTCCGTGTGGTTATTTTAGAGAACCGAGGCAGAATATGCTGCTttaaagagaagagagaatgaaTGTCAAGTGATCTAAAATGGACACCTCATCACCTGCTCCACCCACACCTGTCCCAGAGCGGTTGCTAGCTATTCTACAACAACTGACCAGTGAGGAGTTGAAGTCATTTCAGTGGTACCTGAAGCAGCCTGTTTCGGGTGGCTCATCTCCCATCCCAGTTAGCAGGCTGGAAAATGCTAAAAGAGAGGACACAGTGGATCAGATGGTGCATACCTATAGGGAAGCTGGTGCTCTGGAGATGACACACCATATTCTGCAAAAGATTAAACGGAATGATCTAGCTGTTCCAATGTCAGGGACAGAACACCAAGCCACAGCAGGAGTATCAGCCACACCAACCAGGCCCAACCTGAACACAAGCACCGTACCAGTTCAGGATGTTCAGGATGCTTCTGCAGATCTCTCCAACCACACTGAGCCTGGAGACCATGTTAAGGAACATAAACTCACTACTGTTAACTCTACAGATGATGGTCCTTCGTATGAAGATGTTGAGAAGTACCGGCGTAAATTCCAATACAAACTGAAGGAGAAGATTCAGCATGTATTTGAGGGGGTGCCAAAACAGGGAAAGAAAACACTTCTCAATAAGATCTACACAGAActctacatcacagagggtggaaGTGAAGAGGTCAATAATGAACACGAGGTAAGACAGATTGAGATCGCATCCATCACACCAGCAGCGACAGAAGAAAGGTTGATCGAATGCAATAACATCTTTACATTTGTAACTGGACAAGACAAACCTAccagaactgtgctgacaaagggagtcgctggcattggaaaaacatTCTCTGTACTTAAGTTCATtttggactgggctgaaggaaaagcaaatcaaGATATCCAGTTCATATTTTCACTGCCTTTTCGAGAGCTAAATTTGGTGCGGAAGAAAATGCTGAGTTTAGTGGATCTTGTTCATGAATGCATCAGAGAGGCAAAAGTGATTGAGAAGGAATTTCTCTATCAGGTTTTCACAAAATTACAAGACTCAGGAAACCCAAACTACAATGAGAGCAGGTACAAAGTTCTATTTGTCCTTGATGGTCTAGATGAGTGTCGATTGCCTCTAGACTACAAGAAGAATGATAGCTGGGATAAAGCTACAGAGCCAACCTTAGTGGATGTGCTTCTGAAATCCCTCATCAATGGGaatctgcttccctctgctcGCCTCTGGATAACCTCCAGACCTGCAGCATCCAATCAGATTCCTTCTGggtgtgttgaccaggtgacagaagtacgagggttcaatgacccacagaaggaggagtactTCAGGAAGAGGTTCAGTGATGAGAATCTGGCAAACAGAATCATCTCACACATTAAGACATCAAGGAGTctccacatcatgtgccacataCCAGTCTTCTGTTGGATCGCAGCTACAGTTCTGGAGCGCATATTGAGCACAGATACGAATGGAGAAATACCAAAGACTCTGACTCAATTATTCCTTGGTTTACTGGTGTTTCATGCTAAACAGATGAATGAGAAATATAATGAGAAAGGCGAGGGAGAGCCACACTGGGATAAAGAGAGCATTATGGCACTTGGAAAACTGGCTTTTCAACAGCTAAAAAATGGCAACCTAATTTTCTATGAGTCAGATCTGCAAGAGTTTGGCATTAGTGCCAGAGAAGCTTCGGTTCGCTTGGGAGTGTTAACACAGCTCTTCAGAGAGGATTATGGGCCGTTCCAGGAGAAGGTGTACTGCTTTGTGCATCTGAGCATCCAGGAGTTTCTGGCTGCGTTGTATGTCTTTTTATCATTCAACAACAACAATGTAAACCTAATGAACAAAGAACTTTCCACCATCAGAAACATTCTTAGGAAGTTTACATTCAAATCTGCCTTCACCTTTCACAAGAGTGCTGTGGATAAAGCCTTACGGGGTAAGAATGGACACCTGGACCTgttcctccgcttccttctgggcCTCTCACTAGAGTCCAATCAGTCTCACTTACACGGCCTACTGACACCGACAAGGAGCACGAGAAGCAGCTCTCAGTGCCATGAGAAAACAGTCAAGTACATAAAGAGGAAGATCAGAAAAAATCACTCTCCAGAGAAGTgcatcaatctgttccactgtctaAATGAACTAAATGACCATTCACTGGTGAAGGAGATCCAAAACTACCTGAGCTCAGGAAATGTCTCCAGAGAAGAACTCTCACCtgcacagtggtcagctctggtctttgttttgttgacttcagaagaggagctggttgtgtttgatctgaagaaatactccagatcagaAAAGGGGCTTCTGAGACTGTTGCCAGTCGTCAAAACCTCCAGAACATCTCTGCTGAATGGATGTAACCTCACAGAGAGATGCTGTGAAGCTTTAGCCTCAGCTCTCAACTTCTcccacctgagagagctggacctgagtgaCAACAACCTGCTGAcagattcaggagtgaagctgctcgcTGTTGGACTGGATAATTCGCACTGTAAACTTGAGACACTCAGGTTGTCATTTTGTGGAGTCACAGCGAAAGGCTGTGCTTATCTGGCCTCAGTTCTAATGTCAAACTCTTCaaacctgagagagctggacctgagtgaCAATGACCTGCGGAATTCAGGAGCAGAACTGCTCTCAGCGGGACTGGAGAGTCCACACTGTAAACTTgagacactgagGTTGTCATTCTGTGGAGTCGCAAAgaaaggctgtgcttctctggcctcagctctgaggtcaaacccctcacacctgagagagctggacttGAGCTACAATCACTCAGGAGTGAATCTGCTCTCTGCTATATTAGAGGATCCCTGCTGTAAactggagaaactcaaCATGGGATCTGGAGATTTCGCAACCCAACCAGGTCAAATTAAATATGCACGTAatctcacactggacccaaacacagcacacagacgcctctctctgtctgaggggaacagaaaggtgacatggGTGGATGAGAAGCAGCGgtatcctgatcacccagagagatttgggAACTGCGAacaggtgctgtgtagagagggtctatCTGGGCCAGGCCCCTGTTACTGGGAGGCAGATTGGAATGGGGAATGGGCTGTTATAGGAATGGCATATAAAGGAATCAGCAGGACAGGAGGGCGTAAAGACTGTGTGCTTGGATACAATCGTAAGTCTTGGAGTTTGGAGTCCTCTAATCACAGCAACACCACCTGGCACAATAATAACTGCACTGAGTTTCCTGTCCAATCCTCCCCTTACtacagagtaggagtgtatctggactggcaGGCCGGCATTCTGTCCTTCTGCAGAGTCTCCTCTAACATACGGACACACCTGCACACATTCCACACCAaattcactgagcccctctacCCAGGGTTTTATGTTGGGAGTGGCTCCTCAGTAACTCTGAGGTAAAAACTTTGCTTTAGGACAGCGGCTTTCTTGTTATTATTGGCGTTTGTAAATAATGTTATTCGTAGAGTGTTTTGTGAAACTCTGCTTCTGTTTGAACTCAATTACACTGAATGGAATTTTCATGGTACCTTTTTTTGGCATGGACTTGGTATCTGTGTCAAGGATTATCACAAATTCAACATGACactggagatacagtatattacagacaCCAGGATTGCAACCCAACTACAGAGTAAAGTCAACCGGTTACTGGTAAGAGAAATACACAGACAGACTGCTACAACTCTTAAGTAGTGCTACTGGTTACACTCAGAACACTAGTGACGAACAAAAAACTATATCTGAAAGACTTGAGACCCTTGGAGATATTATTTCAGTATTTATTGATATTAACTGTTGTAAGAGTGTAAGTATTGTTTATTCTGTCATTCTAACAGTTGCCGCTGTATATACTGGGATCACTGTGATTATACTATTATGTTATTTGAAGATGTCACACTTGAAATAAACTGAAAAGatgtacaggtgtaggatcttaatttgatcacttgcTGCTGAGAATTTTACTGCACAGCAGAAAATGCGAACTTGTAGTGAGTTTTAAAGAGGCTTCTAAAGTCTGGAATTTGACATATCATCAACCCCTAGAAAAATGTTCAATTCACCTTTCCCAATTCACATTCCCTGTTGCTGCAGGAatcttttcctgctgtagcaaacggTCTCAAATGAAGATGGTAACTGTCTCACCACAGTTTATATGACCGCAACATCAGGAGTTTCGTAAGCATACCTTTTAGCAATTCATTTTTTGTGATTTTCCTATACTAAAAAGGTATATTATGTGAAAAGGGAAAAAATGGACATCTGTTTAAATTATGTTTGTTTAATCCAACAAACCCAGGGCATTGGTCCACGCCAGCTTGTGAATGTATCCCGTGTTGGTTCAGTTGGTACAGcctggcacttgcaatgccagggttgtgggtttgactcccacaggggaccagtatgaaaaatgtGTGAACGCACTACTGtaagtagctctggataagaacctctgctaaatgactaaaatgtgatATTTAACACATCGTCAACCCAATAACATATtagcctacagtacagtaggcctatgtcCAATAGTGAACTGAGCCTGATGGAAGAGTAAAACCTATAGTTTGATATTGGGAGTGTTTGtattacaacaaaaaaatgtttgACCATCATGTGAATTAAAAAGGTATTTTATGACATGTTTGACCACCA

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612831.2 True 5483 mRNA 0.43 9 51525267 51546934
Loading

Neighbor

gene id symbol gene type direction distance location
mfsd8l2 LOC106568744 coding downstream 8358 51496080 ~ 51516909 (-)
LOC110530046 LOC106568804 coding downstream 144404 51377904 ~ 51380863 (-)
LOC110530045 LOC106568741 coding downstream 201667 51316294 ~ 51323600 (-)
LOC110530043 LOC106568739 coding downstream 266206 51252355 ~ 51259061 (-)
LOC110530042 kcnt2 coding downstream 335655 51127614 ~ 51189612 (-)
LOC110530052 LOC106568747 coding upstream 13866 51560800 ~ 51582355 (-)
LOC110530053 LOC106568748 coding upstream 36591 51583525 ~ 51591883 (-)
si:dkey-18p12.4 LOC106568750 coding upstream 101604 51648538 ~ 51689345 (-)
eif4a2 LOC106568752 coding upstream 195280 51742214 ~ 51751447 (-)
LOC118965688 NA coding upstream 196943 51743877 ~ 51744055 (-)
G719854 NA non-coding downstream 59039 51465976 ~ 51466228 (-)
G719842 NA non-coding downstream 78283 51446739 ~ 51446984 (-)
G719841 LOC106568743 non-coding downstream 79747 51445220 ~ 51445520 (-)
G719835 LOC106568743 non-coding downstream 85872 51438954 ~ 51439395 (-)
G719930 NA non-coding upstream 41018 51587952 ~ 51588192 (-)
G719970 NA non-coding upstream 93435 51640369 ~ 51640659 (-)
G719981 NA non-coding upstream 135197 51682131 ~ 51686715 (-)
G719992 NA non-coding upstream 159523 51706457 ~ 51706712 (-)
G719151 NA other downstream 585796 50936928 ~ 50939471 (-)
LOC110530011 LOC106568709 other downstream 1636015 49866272 ~ 49937001 (-)
G718489 NA other downstream 1687571 49785674 ~ 49837696 (-)
G716488 NA other downstream 2736305 48788521 ~ 48788962 (-)
G721275 NA other upstream 1214105 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 1916248 53462034 ~ 53478913 (-)
G722459 NA other upstream 1951214 53495804 ~ 53499730 (-)
G722602 NA other upstream 2256509 53803443 ~ 53856065 (-)
G722670 NA other upstream 2379294 53926228 ~ 53927959 (-)

Expression

LOC110530051(LOC106568746) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC110530051(LOC106568746) Expression in each Bioproject

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LOC110530051(LOC106568746) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network