LOC110530053 (LOC106568748)


Basic Information

Item Value
gene id LOC110530053
gene name LOC106568748
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51583525 ~ 51591883 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612833.2
GGCAGCAGAGACACCTTGTGGCAAAACAGGAAAAATATCTCCTGTTCTATAGCTGCAGTGTATACCCTACCAAGGAATGGTACTCCAGCACTACAGAGGGCTGTACATCAAACTTtcttccttcacacacacacacaccttcacacctGAGCAAATGCTATAACAGTGTCAGACAGCCATTGGGCCAGAAAAAATGGCTAAACATTGAGGCACTCAAATTCAATGTGTCTTGACTTCTTGACCAACTCATTTTAAGCATGGGGTATGGTACTTGTCACTCAAGTTGCCCACACAGGTATGACAAGCATGCGGTTGACTGGGGTTGGAGTTTAAATAAGAAGTAGCAGGCTTGTCACTGAGAGTCCATGCCGTGTTGGAGAGAGCCCCCACTGACAGTTGAATCCCTTCCCCTGGTCCGGGAAGATGAAAACAGAGTTCCAGCAAGAGGCAGTTCCAGCAGTCTGTCCGCACAGCTTCTTCTGTGAGCAGAGGAGGTTTTGGGGTGTCTGGGAAGATGTTCTTTGTGACAGGGGCCAAAAGTGCAGGAGGGGCATCATCGGGAGGAGGAGCGACGAGGTCCATCTACCAGAAGTTCCGGGATGTTGACCTGCTGGACAAGAAGACGGTGACGGCTCTGAAAGCTGGAGAGGACCGGGCTATTCTCCTGGGCCTGGCCATGGTCACTGCGTCGATCATGATGTACTTTGTCGTGGGCATCACCATACTACGCTCTTACGCAGACAGTGTGTGGACAGAGGAGAGTGTCTGTATTGTGGTCAACTCTACCATCATGGCAGACGTGAACTGCTCTTACAGCTGTGGCTCAGACTGCTGGAGAGGCTCTAAGTTCCCCTGTCTGCAGGTCTACGTCAGTGTCAACACCACGGGCAGGCTCAGCCGCTTATCTCACAATGAGGAGAGCTGGGAATCCAACTTTGAGTGTTTCTACGTACCAAAGTGCCACAAGGACACTGCAGCCATGCACCACATGATCGTGAACATCTCAGAACGCCTGAAGCCGCACCAGCAGGTGCCCTGCTATTACGACCCCAGCGACCAGCAGGAGAGCGCCCTCTTGACCCGACTGTACGACCACAGCGCCGTCTTCTACTCGCTCTTCTGGCCCTCCTGCATGCTCACGGGGGGCACTGCCATAATCTTCATGGTCAAACTCACCCAGTACCTCTCCATTATGTGTGAGCAGGTAGTCAAGATCAAGAGGTGAAGCTTGCTAGCGCAGTAACTGAGAGCGACAAACATGGTCTCCAGTCCAGACAGATAATGACATGAAAGGGATTGTTTTAACCTAATGACCCTGTGACCTCTTGTAATGTCGCTCTCTCAACACTGAGACATTTAGAACAGGTGGCTTGATTTGCTTCTGTTCTACTTACGGACTGTTGCAAATTGAATGTGAAAGGAATGTTCTGAAATGGACATCTAAGCAGCTAAATTAATGTATGACCTCTGTTGCCTGAAAAGCAACATGCATGCATGTATAGTAGtgggaagtagtttgggggtgggGACAAACCTTTAGCCCGTGCTGATGCTGCAGATGGCTATatcggtctgctaatacaggactattaaaggcccagtgcactacttttgtgatttcattttttaattcagatttttcagggggtgctgcagcaccctcagcaacCCTGCTTCCCCCAGCTATGCATACATGTCAGAATATGCAACCTTTTCACAGAAATGAATAGGCTATTttaatgttgttgtttatctaccttgtcatatgcacaggatacacaatacaatgaaatgcttacttgcaggttcccgCTCGACAATGCGACCACAATAAGAAATACTTAAATGATTTGCAGACTTTGAACGCAGGGCTCTAACATAAAGTTGGGTACCCTCTCTTACAATACTACATTTGGAGTAATGTTGAGCACGTGTCCTTTATCTCACAGATGACAATGCCGAGCAAAATTTGTGCTGACGGAATGAGACAGAGTTCATTCTCCCAAATTGTACACTGTTGAAGATAATTGTTCATGACCTACTGTGTTGAGCAAAGTTAAAACCTTGTGCAGTTCCTGTATGTAATTTTTGCAGAAGAGGGTTAAAGACCATTGTCGAAATACCCGAACTAGCTAGAATATGCTGAATCTAATGTGGAAATTGCTGAATGAGAGCATCAACATATTTTAGGGGTCAGCCATAGATTATCTTATTTGCAGttattaccattttattgttcAGTCTGTCATACAAAAATTGTGCTATGCAAAAATGTGTCTCTGATGACAACCAAGGAAAGTTGCTACatcatgtttattttttatacattttgctCTGTATGCAATAAATTACCTCAATAACATATTGATGCAGTTATGACTTCCCATGGTGAGGCATatcaaaattaaataaataatctgACGGTAAATCTAGTGCATTTCTACAATCAAGCAATTGTTTACAAATGATGCAACTGTAATACACCCTACCTTCTTGTTCAGAATTTCTTAGAAA
>TU817929
ggggtgctgcagcaccctcagcaacCCTGCTTCCCCCAGCTATGCATACATGTCAGAATATGCAACCTTTTCACAGAAATGAATAGGCTATTttaatgttgttgtttatctaccttgtcatatgcacaggatacacaatacaatgaaatgcttacttgcaggttcccgCTCGACAATGCGACCACAATAAGAAATACTTAAATGATTTGCAGACTTTGAACGCAGGGCTCTAACATAAAGTTGGGTACCCTCTCTTACAATACTACATTTGGAGTAATGTTGAGCACGTGTCCTTTATCTCACAGATGACAATGCCGAGCAAAATTTGTGCTGACGGAATGAGACAGAGTTCATTCTCCCAAATTGTACACTGTTGAAGATAATTGTTCATGACCTACTGTGTTGAGCAAAGTTAAAACCTTGTGCAGTTCCTGTATGTAATTTTTGCAGAAGAGGGTTAAAGACCATTGTCGAAATACCCGAACTAGCTAGAATATGCTGAATCTAATGTGGAAATTGCTGAATGAGAGCATCAACATATTTTAGGGGTCAGCCATAGATTATCTTATTTGCAGttattaccattttattgttcAGTCTGTCATACAAAAATTGTGCTATGCAAAAATGTGTCTCTGATGACAACCAAGGAAAGTTGCTACatcatgtttattttttatacattttgctCTGTATGCAATAAATTACCTCAATAACATATTGATGCAGTTATGACTTCCCATGGTGAGGCATatcaaaattaaataaataatctgACGG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0015269 calcium-activated potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612833.2 False 2514 mRNA 0.45 5 51583525 51591883
TU817929 True 780 lncRNA 0.38 1 51583615 51584394
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110530052 LOC106568747 coding downstream 1170 51560800 ~ 51582355 (-)
LOC110530051 LOC106568746 coding downstream 36591 51525267 ~ 51546934 (-)
mfsd8l2 LOC106568744 coding downstream 66616 51496080 ~ 51516909 (-)
LOC110530046 LOC106568804 coding downstream 202662 51377904 ~ 51380863 (-)
LOC110530045 LOC106568741 coding downstream 259925 51316294 ~ 51323600 (-)
si:dkey-18p12.4 LOC106568750 coding upstream 56655 51648538 ~ 51689345 (-)
eif4a2 LOC106568752 coding upstream 150331 51742214 ~ 51751447 (-)
LOC118965688 NA coding upstream 151994 51743877 ~ 51744055 (-)
LOC118965689 NA coding upstream 157341 51749224 ~ 51749294 (-)
LOC118965644 NA coding upstream 157867 51749750 ~ 51749819 (-)
G719886 LOC106568745 non-coding downstream 8277 51511287 ~ 51575248 (-)
G719854 NA non-coding downstream 117297 51465976 ~ 51466228 (-)
G719842 NA non-coding downstream 136541 51446739 ~ 51446984 (-)
G719841 LOC106568743 non-coding downstream 138005 51445220 ~ 51445520 (-)
G719835 LOC106568743 non-coding downstream 144130 51438954 ~ 51439395 (-)
G719970 NA non-coding upstream 48486 51640369 ~ 51640659 (-)
G719981 NA non-coding upstream 90248 51682131 ~ 51686715 (-)
G719992 NA non-coding upstream 114574 51706457 ~ 51706712 (-)
G719993 NA non-coding upstream 115907 51707790 ~ 51708111 (-)
G719994 NA non-coding upstream 116422 51708305 ~ 51708550 (-)
LOC110530043 LOC106568739 other downstream 324506 51252355 ~ 51259061 (-)
G719151 NA other downstream 644054 50936928 ~ 50939471 (-)
LOC110530011 LOC106568709 other downstream 1694273 49866272 ~ 49937001 (-)
G718489 NA other downstream 1745829 49785674 ~ 49837696 (-)
G716488 NA other downstream 2794563 48788521 ~ 48788962 (-)
G721275 NA other upstream 1169156 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 1871299 53462034 ~ 53478913 (-)
G722459 NA other upstream 1906265 53495804 ~ 53499730 (-)
G722602 NA other upstream 2211560 53803443 ~ 53856065 (-)
G722670 NA other upstream 2334345 53926228 ~ 53927959 (-)
G719930 NA non-coding upstream 3558 51587952 ~ 51588192 (-)

Expression

LOC110530053(LOC106568748) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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LOC110530053(LOC106568748) Expression in each Bioproject

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LOC110530053(LOC106568748) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
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Co-expression Network