si:dkey-18p12.4 (LOC106568750)


Basic Information

Item Value
gene id si:dkey-18p12.4
gene name LOC106568750
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51648538 ~ 51689345 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612841.2
TGTACTCATTTTTAGGTtgttttatactgtagtgacagtAATTGGAATACAACTGCATTACTGTGTTCCATTTCACTTTCTgtttattcatttaaaaaaataacattgtttGAAATGACCCAGGTGGTGCTAGTGGGTGGAGAAGACGACAGAAGACTGTAAACAAACCATAATCAAAACAGGTTCTTAATTCTGTGGATGGCGGTGAACAACAGGACTCCTGAAAATGATTCTGCATTCTATACTCTCACTGGGTTTTAAAGCACTATTATAGTAAAAAGATGGCTTCACAGACAGATTCGATACTGAGAGTTGGTGGCAGTTGCGGCAGCATTGGAAGAATTTGCAATAAAGAGAACAATCACAGAACCTGTTCTTCACAACCTTTCAACAAACCATTAATGTGCTTACTACACAAGAGGAAGAAAAGCCTCAAGCATAAAGTACTTAAGTTGTTGGCACAAATGAAGGGAACGGACAAAGAGAAAGAAGATTTCACCTTTGATGAGTCTAAATGTATCATAAGAGAGCTTGCTGCTGAACTGAGCAAGGTAGTTCAGTCCTCACAGATCAGCAACACCTCCCTTCTGACCAGAGTGAATGAGGATGGATCTTGTCAAGAGGAGCGTCAAGACTTTATACTGCAGTGGGCTGAGGAGCTGAAACACTCATCACAGACACAACAGACACCAGCAGGGGAAATCACAAGACACAGGAGGAGTGACAACCCTCCAGATCAACAGAAACCAGACAAGGAACAGAAACTGAGGGAAGCCACGAAAGCCCTTTCTGAGTGGGCCTGGAGACTCAAGGATACGGAACAGGACTCCGTGTGTCTGGGTGAGGATGTGTGTTCAGTACTGCAGGATCTGGAAAGACAGTGGAAGAGGGGGAAGCTTCCCAACATGCTCCCTGTCATGGACTTCCTCATCTGGAGCATACTACAGGAACAGCAGGAGGGTTCCATTGTAAAGCATTGGCTCAGAAATAGACAAAGGTCCCGAAGCAGAGTGACTCTGAATCGCGTTCCTGACTCAATTTGGAACTTGATTTTGAAAGCATCAGTTgagatcactctggatgaaaaaACAGCCAACCCAAATCTCTTACTGTCCGCTGACAGGAAAAGAGTGAAAATGGCCACCATCATTGAGGATGTTTTTGATCCCCGGGATGGATACAGCCCTGGATCCCACACGTATGATGGCTGGTGGTGTGTCCTTGCAAAGGAGGGCTTTACATCTGGGAGACATTACTGGGAGGTGAGAGTCTGGGGCAAGgcagagtggaggataggtgtgGTTAGAGAGTCAGCACCGAGGAATGGCTTTGCAAATCTGAACACAAAAGCTGGTTACTGGAACTTGCGTCTGCAGCTTGGGGAGCTCATGGCTCTAAGTGCACCAGTCATTAAACTGAACCAGTCTCCACCCTCTAGGTTAGGGGTGTTTCTAGACATAGAGGAGGGACAGGTATCCTTCTATGATGCAGAGGAACGATGCCACATTTACACTTTTAATGTCAATTTTGATAACTTTGGAAAGATTTACCCTGTGTTTGGAACaattgagacagacagagagctggttaTTCTGTAGGGAAAATAACTTGATGCAAGCTGTCTGGCTTACTTTATGGACATCTCAATGTATAGTTGTTGACTGTCTCAACTGACAATTCCCTGAGATTACAAAAGGTGTTCCTCAAGAGTCCATTTTAGGGCCGTTTTATTCACACTGTAtgtaagcaatcgggggagaacagccttggtcagagaggtgaccaagacaCAATGGCAGACACTctggacagagctccagagttcctctgtggagatgggagaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612841.2 True 1844 mRNA 0.45 11 51648538 51689345
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110530053 LOC106568748 coding downstream 56655 51583525 ~ 51591883 (-)
LOC110530052 LOC106568747 coding downstream 66183 51560800 ~ 51582355 (-)
LOC110530051 LOC106568746 coding downstream 101604 51525267 ~ 51546934 (-)
mfsd8l2 LOC106568744 coding downstream 131629 51496080 ~ 51516909 (-)
LOC110530046 LOC106568804 coding downstream 267675 51377904 ~ 51380863 (-)
eif4a2 LOC106568752 coding upstream 52869 51742214 ~ 51751447 (-)
LOC118965688 NA coding upstream 54532 51743877 ~ 51744055 (-)
LOC118965689 NA coding upstream 59879 51749224 ~ 51749294 (-)
LOC118965644 NA coding upstream 60405 51749750 ~ 51749819 (-)
LOC118965691 NA coding upstream 60765 51750110 ~ 51750180 (-)
G719970 NA non-coding downstream 7879 51640369 ~ 51640659 (-)
G719930 NA non-coding downstream 60346 51587952 ~ 51588192 (-)
G719886 LOC106568745 non-coding downstream 73290 51511287 ~ 51575248 (-)
G719854 NA non-coding downstream 182310 51465976 ~ 51466228 (-)
G719992 NA non-coding upstream 17112 51706457 ~ 51706712 (-)
G719993 NA non-coding upstream 18445 51707790 ~ 51708111 (-)
G719994 NA non-coding upstream 18960 51708305 ~ 51708550 (-)
G720003 NA non-coding upstream 27122 51716467 ~ 51716743 (-)
G720009 NA non-coding upstream 32328 51721673 ~ 51721970 (-)
LOC110530043 LOC106568739 other downstream 389519 51252355 ~ 51259061 (-)
G719151 NA other downstream 709067 50936928 ~ 50939471 (-)
LOC110530011 LOC106568709 other downstream 1759286 49866272 ~ 49937001 (-)
G718489 NA other downstream 1810842 49785674 ~ 49837696 (-)
G716488 NA other downstream 2859576 48788521 ~ 48788962 (-)
G721275 NA other upstream 1071694 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 1773837 53462034 ~ 53478913 (-)
G722459 NA other upstream 1808803 53495804 ~ 53499730 (-)
G722602 NA other upstream 2114098 53803443 ~ 53856065 (-)
G722670 NA other upstream 2236883 53926228 ~ 53927959 (-)

Expression

si:dkey-18p12.4(LOC106568750) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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si:dkey-18p12.4(LOC106568750) Expression in each Bioproject

Bar chart with 20 bars.
si:dkey-18p12.4(LOC106568750) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network