XLOC_025804 (fscn2a)


Basic Information

Item Value
gene id XLOC_025804
gene name fscn2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57234093 ~ 57257075 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050680
ATGTCTACAAACGGAATANCAGCTCTAAAGCTCCAGTTCGGACTTATAAATCACGAAAATCGATACCTAACTGCAGAGGCATTTGGTTTCAAGATCAATGCATCTGGAAATAGTATGAAGAAGAAACAGATCTGGACTCTGGAGCAGGACCCGGATAGCCAGGTGGTTTTCTTGCGCAGTCATCTCGGACGTTACCTGTCGTCCGATAAAGATGGCAAGGTAAGATGCGAGGAGGAAGTCCCGAACACAGACTGCCGTTTCTTGATTGTGATGCAGTCCGATGGACGCTGGGCCTTGCAGTCAGAGCCATACTTACGTTATTTTGGAGGCTCTGAAGAATATCTTTCCTGTTTCGCCCAGACTATTGGAGAGTCCGAGCTGTGGGCTTTGCACCTGGCTCTTCATCCACAGGCTAACCTGCTAAGTGTTGCTCGCAAGCGCTATGCTCACCTGTCCACCCAAGAAGATGAGATCTCCATGGACAGCAACATCCCCTGGGGTGTGGACTCGCTGATCACCTTGGTTTACCTGGAAGGCAAGTACAGTCTAAAAACCTGTGACAACCGCTTTCTCAGGAATGATGGCAAGCTGGTGATGGAGCACGGCCCTAACACTAGCTTCACCCTGGAGCTGAAGTCTGGCAAGCTGGCCTTTAAAGACTGTGAAGGCAAGTACCTTTCGCCGAATGGCCCCACGGGCACCCTGAAGTCGGGCCGCTGTACGAGACCAGGGAAAGATGAGCTGTTTGATCTGGAGGAGAGCCACCCACAAGTCGTTTTCCAGGCAGCCAACAAAAGATATGTGTCAATCCGTCAAGTTTGCATCTCAGCTAATCAGGACGATGAGACGGACATGGAGACATTTCAGATGGAAATCGACAAAGAGACGAAGAAGTGCATGTTCAGAACCAATGGTGGAAACTACTGGACTCTTGTAACTCATGGAGGGATTCTGTCCTCGGCCACGGAAATAGAAGAAAACACCATGTTCGACATCGAGTGGTTGGGTCGACGAATCGCTTTGAAGGCAAGCAATGGGAAATATGTGTGCACAAAGAAAAACGGCCAGCTGGCTGCAGTGAGCGACTCATTGGGAGAAGATGAGCAGTTTGTGCTGAAGCTCATCAATCGTCCCATCCTGGTCCTGCGTGGAGAAAATGGCTTTGTGTGTCACCACAAAAACTCCAACACCCTGCACGGCAGTCGCTCCTTTTACGACATCTTCACACTGCTTTTCAGCGATGGCGGATACCAAATAAAAAGTGGAAATCAGAAGTTCTGGTACGTCTCCAGCAGTGGTCTGGTGTGCACAGATGGGGACAAGCCTGAAGATTTCTTCTTTGAGTTTGTGGAGTATGGTCGGGTTGGCATCAAGGCCCAGAACGGCAAGTACCTGCGTGGCGATCAAGGAGGAACGCTAATGGGTGACGGTCTCAGTGTGAATGCCTCATCCTTGTGGGAGCACTGA

Function

symbol description
fscn2a Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly; cell migration; and establishment or maintenance of cell polarity. Predicted to act upstream of or within actin filament organization. Predicted to be located in cytoskeleton. Predicted to be active in actin cytoskeleton and cytoplasm. Is expressed in eye. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 30. Orthologous to human FSCN2 (fascin actin-bundling protein 2, retinal).

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0007015 actin filament organization biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0005856 cytoskeleton cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110901-1 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly; cell migration; and establishment or maintenance of cell polarity. Predicted to act upstream of or within actin filament organization. Predicted to be located in cytoskeleton. Predicted to be active in actin cytoskeleton and cytoplasm. Is expressed in eye. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 30. Orthologous to human FSCN2 (fascin actin-bundling protein 2, retinal).

Ensembl:

ensembl_id ENSDARG00000059574

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050680 True 1467 mRNA 0.50 6 57234093 57257075

Neighbor

gene id symbol gene type direction distance location
XLOC_025803 bahcc1a coding upstream 60052 57038033 ~ 57174041 (+)
XLOC_025802 NA coding upstream 276535 56949955 ~ 56957558 (+)
XLOC_025801 otop2 coding upstream 315651 56905103 ~ 56918442 (+)
XLOC_025800 amn coding upstream 356175 56876280 ~ 56877918 (+)
XLOC_025799 NA coding upstream 411890 56821699 ~ 56822203 (+)
XLOC_025805 NA coding downstream 11288 57268363 ~ 57323496 (+)
XLOC_025806 NA coding downstream 169085 57426160 ~ 57480996 (+)
XLOC_025807 NA coding downstream 177186 57434261 ~ 57436304 (+)
XLOC_025808 CT573423.1 coding downstream 379299 57636374 ~ 57641090 (+)
XLOC_025809 NA coding downstream 509549 57766624 ~ 57768666 (+)
XLOC_025429 BX649540.1 misc upstream 26985057 30248739 ~ 30249036 (+)
XLOC_025796 CU019632.1 non-coding upstream 611221 56619195 ~ 56622872 (+)
XLOC_025793 NA non-coding upstream 873443 56358682 ~ 56360650 (+)
XLOC_025791 FP326652.1 non-coding upstream 1126184 56099256 ~ 56107909 (+)
XLOC_025814 NA non-coding downstream 724183 57981258 ~ 57986847 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_02887084_02894055 FSCN2B, FSCN2, FSCN2A coding CI01000112 null 2886674 ~ 2894589 (-)