XLOC_025805


Basic Information

Item Value
gene id XLOC_025805
gene name NA
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57268363 ~ 57323496 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050681
ATACCATATAGCTCCACTCATTTGACCCCACTCTCCCCTAAAGCTTTTATAGAATCGACTACATGTTTaaatggcttgccatagagagTAACTGTTGCACGCTGACTGACTCAAATGTTGATGGAGAGTTCAGATCTTCTGCTTCACTTCATTCACGGCAGGAGAGGAGAGATGCGAGGAAAAACCTCGAGTTTCTTCACCCAGCAGCAGTTGTTCGCCTATTTCTCCTTCAGCCTGGAAAATAAATCAGCAGAAACACACTCGGAATCATGCGCGGTAATGAGTGTGAAGGGGAGCTGAATGGCTGAATAACCTGAATCGCGGATGAAGATGAACTTTGGCTCAGCTGTGGTCGCCGCGGGTCTCTGCGGGCTGATGAGTTTCATCCTGCTCGCCGTGTCCATCGCCACTGAATACTGGTACATTATAGATGTGGATGAAGGCAAGAACTCCAGCCTGGAGTATAGCAGCTCTCACTCCGGGCTCTGGAGGATTTACGAAGGACCCAATGGCAGTTATCATGACATCTCCTTCTACACGGACACATCGCAGCACACCGAACAGGAGAAACACCTTTTGGacctgCACAGGGTGATCGTGGTGCTGCTGCCGCTCAGCCTGGTGCTGCTGGTGTTTGGAGGGATCTTTGCTCTGGTGGCGTCTTTGACTCAGAGCTGCTCTCTCCTCATTTGCATCTCTGTGTACTTCCTCATCTGCAGTCTGTTGACGGTGTGTGCAGTGAGCCTCTACATCAGTTACTCTCAGCAGGCTCTGGAGGAGCTGCGGCTCACGGTGGATGTGGACTCTCTAACTCACGTCCACATGTCCTACGGCTGGTCTCTGGCCATGGCCTGTGTGTCCTTCAGCCTGGAGCTGCTGACGGGACTCCTGCTCCTGCTGGCGGCTCATCTCGTCCAGCGCGAACCGGCCAGAGACAGACTGAGCCAGAGCGAACCCCAGAGCCTCAGACTGCAGTGAGGATCTGATCTCCATTCATCGTCAGCCTCCAGAGCCAATCAAACAGCTGCATCAATTATTGAAGGAAAGCGCACACACACTTGAGGACTAGCAAATCTGTCTTCAGCACTCGAGTCTGTCAGTATAATCACGTTTTCTTCAAGAACTCACATTTCCGTCTGCTCTCAATTGCATTCAATGTTCACAGCATGAGAATTCAAGCCATTGCAGTTTTACATGTGGTATCTCTTATTTTTTTACAGCACCCTACAGTAAAATCCAGCTTaacccagcctaggctggtttaagctggatttttcagcagggcatacTGCAtcttaacccttatgtactgttggggatgttttcatccactctggggtgattttgataTGGCCATAACTTTTTGTGTTTCAGCTTGCAGAATGATTTTCGGTGACTAATcgatcttattttgacacatattttgagaaaatgctttgaattaaaaagaaaaaactcaaCTATACACTCTTACAACCTTTTCGTTATGGTCATgataaaaacatccactaaattaaactgcttaaaaatgcatcaaattattattattatttttttcataaatctgttaatcaacctctgTACTGGGGTCAGTTCTATGTACGttgattactcaattagctggatttggatattgacgatttgacacgatccaggattgtttcgttcttcaaatcTGAtgcgagagttgttgtcatagcaacagttctggtagcttaaacctgctcgggagcaggctcatttcatataaacaggattagatggTCAGTTCAAGCAaggataatactgaaagtatctaccgaattctgatattttcctagagtagtagttatatacactttggaaaatagtaaataatttttaactctatatataaacagttaaaaaaatcttttatatatatatatatatatatatatatataaaacttacaatctgcactccgaaataaaattacaaagactgccacctggtggttcaaagagaaaatttattgatattaactttttagatcgctttagtacaagtTGTGTGTAATAATAGATATGCACAacatgcaacttttttttttaagcaataatacatCAATTCAGTCATGaaaatgttttgacagttaatatgttgGTCATTTGATGCTTAACAAAATTCGCAGACGCCTTTACcattatcaaaatgcttttgtaaacatccagttattctactaaataaatagctaaatactcttgacacatgaaagagtaAAGCATGCAGAccacaacaaatgtgtaaagttattgcgtgtcatatttaacaaaccgtttcctattaatttgatgtaattttgttcacatggataatcagatgatgtcaatGCGCTGCTGTggcgtcagccaatcattgcattgctgatcatgatttcgaggatcgatagatctgtccttcgcCACACACGCagagatctcagatcagttcatccagacattttaatctgattcgtgaacttcatcttcgtttgaagaaccaaattagccagagatcagttatcaagattaacagatccataTCACAGATATATAATAGCCTAATTCTGGATTCAACAGATAACACCCTTCAAATTAAAGAAAAATGGGAATCTGAACTTAATGAAAAAATTGAGGATGATATTTGGGAAAACATATGTTCAGAAGCTCATAAGGGGATCAACAGCCATAACTGGAAAGAGTTTGACTGGAAAACAAAAATTAGGTTTTTTAGAACACCATTGATGGTCTCCAAATATACTAATCGTCCACAGTCAGAGGAATGCTGGAGGGGTTGCGGAAATGTGGGTAATCATGCACATATATTTTGGCAATGTCCGAAGATACTTGCATTTTGGCAAGGGGTAAAGATTGAGATAATGAAAATTATGCAGGTAGATCTACCTTTTACTCCCCTGTTTTTCTTGCTTGAAGGGATACCCcaggatatatataataaaaaccagAGATATATACTACATATACTTTTACTAAGTGCAAGAAAGACCATAACAATAAATTGGATGAAGCCACACCCTCCAACAATAGTACAGTGGATAGAAAAACTTGATTGTATATATAGAATGGAGTATATGACTGCTCAACTTCAACTAAAactggatatttttaaacaaagatggGCACCTGTTACGTTGTACCTGAATAGGACATAGTATTTCTAGCtcctttgaaactgaaaatattgtatgtttttttttttttttgtaatttttttatttacatctgcggctactgtcttttttttatttttattttttaaactactaaatgtttttaaaaattacaggatttaaactctttaattgccaaattcacaaatgatgtcactgatttggtgggggaaaaaacacacaaaatgacgtatttccAATAGAAAAAGTAATTGTGTACTAGATGTTTCTTtatcttttatcaaagtcttggagatgtgaaacaacattgactttgatgcattgtttttgaattatttctccctaatttactgtttgtGGCcgttttttgccccattgacttccattataagggcatccactgtgtaaaacatgtgctggagaagctggcagttcatttcactctGGCGACCcaagattgataaagggactaagccgaaaagaaaatgaatgaatgtatagtaACAACATTTTCCATCCATATAAACATAATCCACCTTTAAGTGCCATAATAAACATCTCTGATGTCGAGAAAATTGTCTTTAATGACTATGCTAACTTTTAACACAACACTTTGCAAGGCAGATGTTAAATAAAGCTAGTCATAATTGTGTTTGCATTTGTGGTGATTAGATTAATCTCCCTAAGGCTCACCATTGATTAAATGTCCAAGTCGACACAATGTAAGCTCAATTCAGAAATCAATCAGCCAGTAATTAAATGTGGGAATGATCAATTTGAGAAACGTACTGTATCAGAGGATGGGCCGTTTCTCTTGAGCGTTCTGAGTGTCGTTGTGTTAGTTTTCATTCAGTCTGCAGTAGGGAAAGAGTTCAGGCTGTAATGTTTAGCATTCCTTTCAGGGAATATAGATAATATTAtgctaatatacactcaccggccactttattaggtacaccttactagtaccgagtaggacccacttttgccttcagaactgtcttaatccgtcatggcgtagattcaacaagcgactggaaatattcctcagagattttagtccatattgatatgatagctttccgcagttgctacagatttgtcggctgcacatccatgatgcaaatctcccgttctacCACACCCCAAAagcgctctattggattgagatctggtgactgtggaggccatttcagtacagtgaactcattgtcatgttcatgaaaccagtctgagatgattcaactttatgacatggcgcgttttcctgttggaagtagccatcagaagatgggtacactgtggtcataaagggatggacatggtcagcaacaatactaggAACAATacacaggtaggctgtggcattgacatgatgctaaattggtacta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000109643

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050681 True 4543 mRNA 0.39 4 57268363 57323496

Neighbor

gene id symbol gene type direction distance location
XLOC_025804 fscn2a coding upstream 11288 57234093 ~ 57257075 (+)
XLOC_025803 bahcc1a coding upstream 94322 57038033 ~ 57174041 (+)
XLOC_025802 NA coding upstream 310805 56949955 ~ 56957558 (+)
XLOC_025801 otop2 coding upstream 349921 56905103 ~ 56918442 (+)
XLOC_025800 amn coding upstream 390445 56876280 ~ 56877918 (+)
XLOC_025806 NA coding downstream 102664 57426160 ~ 57480996 (+)
XLOC_025807 NA coding downstream 110765 57434261 ~ 57436304 (+)
XLOC_025808 CT573423.1 coding downstream 312878 57636374 ~ 57641090 (+)
XLOC_025809 NA coding downstream 443128 57766624 ~ 57768666 (+)
XLOC_025810 tmc6a coding downstream 456177 57779673 ~ 57816877 (+)
XLOC_025429 BX649540.1 misc upstream 27019327 30248739 ~ 30249036 (+)
XLOC_025799 NA non-coding upstream 446160 56821699 ~ 56822203 (+)
XLOC_025796 CU019632.1 non-coding upstream 645491 56619195 ~ 56622872 (+)
XLOC_025793 NA non-coding upstream 907713 56358682 ~ 56360650 (+)
XLOC_025791 FP326652.1 non-coding upstream 1160454 56099256 ~ 56107909 (+)
XLOC_025814 NA non-coding downstream 657762 57981258 ~ 57986847 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_02835153_02836999 NA coding CI01000112 null 2834903 ~ 2838073 (-)
striped catfish (Pangasianodon hypophthalmus) G224184 NA non-coding NC_047608.1 CM018554.1 11395436 ~ 11398476 (+)