XLOC_025808 (CT573423.1)


Basic Information

Item Value
gene id XLOC_025808
gene name CT573423.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57636374 ~ 57641090 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050682
CAGCCGCCGATTTAGCGCGCCCGCTCTTCAACTTGTGATGCTTAGTGCAAACCTTTGGCACCTGCTAACTCCCTGCTAACGAGGGTGATCCAAATCTGTGTGGACCAGCCCGGACAATTCAAAACTATAACTCAGCAATTGACCGCATCCAAGCAGAAGGAGCACAAGACGTGGAAGGAGTAAAATTCAGAATGGATGACGTAGAGCCAAGCAACATAAGCAGTGCCATTACTAATGTGTTACCAGACCTACCAACCTCAAATCTAAATATTGTATTGGAGACATTACAATCTTTAGGTGTGGGAGCCACTGaagatttacagtatattaagGAAGCTGATCTGCTCACAGTACTGAGACCAGTTCAAGCTAGAAAACTGTTGGCTGCATGGAAACAATCCA
>TCONS_00052814
CAGCCGCCGATTTAGCGCGCCCGCTCTTCAACTTGTGATGCTTAGTGCAAACCTTTGGCACCTGCTAACTCCCTGCTAACGAGGGTGATCCAAATCTGTGTGGACCAGCCCGGACAATTCAAAACTATAACTCAGCAATTGACCGCATCCAAGCAGAAGGAGCACAAGACGTGGAAGGAGTAAAATTCAGAATGGATGACGTAGAGCCAAGCAACATAAGCAGTGCCATTACTAATGTGTTACCAGACCTACCAACCTCAAATCTAAATATTGTATTGGAGACATTACAATCTTTAGGTGTGGGAGCCACTGaagatttacagtatattaagGAAGCTGATCTGCTCACAGTACTGAGACCAGTTCAAGCTAGAAAACTGTTGGCTGCATGGAAACAATCCAGTAAGTACATTATGCAGAAAGTTACATTTACTTGTAagttaatttcattctTCTCACTGTCTTCCTCACCCTCACCCTCACCATCACCCAGACACATGATTGCTACTGCAGATTGGGTCGACAGCTTCCAGATTCCATGGGAGAAGCTCCCAGAAGCCTTAATGCAGAGTTTGGAGAGAGGGAAAAGGCCAAGCTCAAAGTTACGCAGAGAAATGATCCGAATTGTAGTTGCTGAAATGATGCATGCCTCTTCTTCTCCTGGTAAACAATCCTCCACAGAGGTTGCGAAGAAAATGGTAGCAAAGTATCCACTGTCACTGCAAGATGTTATAGAAGGTGATGTGGTAGGAACAGGATATCACTCACTCGTCAAGCAGCTGCAAGCACGAATTGAAAATGTAAAGCGGTCTTCAGTACCAAGAATATTAAAGCGCAGACGGGGGTCAGATGAATTTGACACAGATGAAATCACAGCTGAACAGAGGGCAGCTGTTCAGGACACATATGGCTGCATAAAGTGGGAAATGAAGTTTATGCCAGTGAGTGAGACACTGGAAAGCCAAgaagagaaaaaagagaaaatgaaagtgaTATTTGAACAGGCAACCTTCAACACAGAGGAGGTAAAACATCTCATGAAGTGCACATACTTCTCCCAGCGTAAATCAGTGAACAGTGGAACCGATCTGCAATTCCTCATGCAAGAGTGGCCTTTCTTATTCAAGGAAGTTGGCATGGCAGTTCACTTTCATGAATTAACTGGTGTTTCCCTGAAAGAGACTTTCCTcagtaatgtaaaacgtgTTTTAGATTTCATGAGAAGTGTTTGTGCAGAAAAAAGCAAACATGTTTTGCAAGCGGCCACAAAGCTGAAAATTCTGAGAGGACAGCTGGAGGGCTGCTCAGAAGATGTAAAAGATCTGGTGCTCCTCATCCTCTCCTACTTTAATGAAAAAGAGGAGGACTTGTTCTTCTATGTGGAAGAAACTTGTATGGCAAAAGAAGTACAAGTGGAAGGCTTACCTGTGACTCCATGCATCATTGTATGCGGAACATCATGTTATGCTGCAAAGCATTTCATGCTGAGTGTTGACCAGAAAATTGTCAACGAATACATCTCCACCTTCATCTCGGCTGTTTGCATGATGTTTGCAACCTACTACTGCCTCAACATTCACTATCCTGTGGGTCTGGGCTCCACACTTGAGTTTATTCAGagGTGTTTCTTCAACATCAATCCTGAGAAGGGCACAAAAGTGGAAACTAAGAAAAACAAGAAACAGCTAACAGTGAATCCAAGAGTCCTCACACTCATTGCAGATCTCTCAGATCATGAGTGGAGAGAGGCATGTTAA
>TCONS_00052386
TAGTGCAAACCTTTGGCACCTGCTAACTCCCTGCTAACGAGGGTGATCCAAATCTGTGTGGACCAGCCCGGACAATTCAAAACTATAACTCAGCAATTGACCGCATCCAAGCAGAAGGAGCACAAGACGTGGAAGGAGTAAAATTCAGAATGGATGACGTAGAGCCAAGCAACATAAGCAGTGCCATTACTAATGTGTTACCAGACCTACCAACCTCAAATCTAAATATTGTATTGGAGACATTACAATCTTTAGGTGTGGGAGCCACTGaagatttacagtatattaagGAAGCTGATCTGCTCACAGTACTGAGACCAGTTCAAGCTAGAAAACTGTTGGCTGCATGGAAACAATCCACAGAGACAACTGAATTCCATAGTCAGTCAACATTGACCTCTCCAGTGTCCTCAGCGTGCTCCTCAGTCTCACTGTCTTCCTCACCCTCACCCTCACCATCACCCAGACACATGATTGCTACTGCAGATTGGGTCGACAGCTTCCAGATTCCATGGGAGAAGCTCCCAGAAGCCTTAATGCAGAGTTTGGAGAGAGGGAAAAGGCCAAGCTCAAAGTTACGCAGAGAAATGATCCGAATTGTAGTTGCTGAAATGATGCATGCCTCTTCTTCTCCTGGTAAACAATCCTCCACAGAGGTTGCGAAGAAAATGGTAGCAAAGTATCCACTGTCACTGCAAGATGTTATAGAAGGTGATGTGGTAGGAACAGGATATCACTCACTCGTCAAGCAGCTGCAAGCACGAATTGAAAATGTAAAGCGGTCTTCAGTACCAAGAATATTAAAGCGCAGACGGGGGTCAGATGAATTTGACACAGATGAAATCACAGCTGAACAGAGGGCAGCTGTTCAGGACACATATGGCTGCATAAAGTGGGAAATGAAGTTTATGCCAGTGAGTGAGACACTGGAAAGCCAAgaagagaaaaaagagaaaatgaaagtgaTATTTGAACAGGCAACCTTCAACACAGAGGAGGTAAAACATCTCATGAAGTGCACATACTTCTCCCAGCGTAAATCAGTGAACAGTGGAACCGATCTGCAATTCCTCATGCAAGAGTGGCCTTTCTTATTCAAGGAAGTTGGCATGGCAGTTCACTTTCATGAATTAACTGGTGTTTCCCTGAAAGAGACTTTCCTcagtaatgttgaaaaaaaaggaaaacgtgTTTTAGATTTCATGAGAAGTGTTTGTGCAGAAAAAAGCAAACATGTTTTGCAAGCGGCCACAAAGCTGAAAATTCTGAGAGGACAGCTGGAGGGCTGCTCAGAAGATGTAAAAGATCTGGTGCTCCTCATCCTCTCCTACTTTAATGAAAAAGAGGAGGACTTGTTCTTCTATGTGGAAGAAACTTGTATGGCAAAAGAAGTACAAGTGGAAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000078608

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050682 False 402 processed_transcript 0.45 3 57636374 57639448
TCONS_00052814 False 1757 lncRNA 0.43 8 57636374 57641090
TCONS_00052386 True 1404 lncRNA 0.44 4 57636416 57640587

Neighbor

gene id symbol gene type direction distance location
XLOC_025806 NA coding upstream 155378 57426160 ~ 57480996 (+)
XLOC_025807 NA coding upstream 200070 57434261 ~ 57436304 (+)
XLOC_025805 NA coding upstream 312878 57268363 ~ 57323496 (+)
XLOC_025804 fscn2a coding upstream 379299 57234093 ~ 57257075 (+)
XLOC_025803 bahcc1a coding upstream 462333 57038033 ~ 57174041 (+)
XLOC_025809 NA coding downstream 125534 57766624 ~ 57768666 (+)
XLOC_025810 tmc6a coding downstream 138583 57779673 ~ 57816877 (+)
XLOC_025811 CU571328.1 coding downstream 179823 57820913 ~ 57823547 (+)
XLOC_025812 cenpx coding downstream 184848 57825938 ~ 57830023 (+)
XLOC_025813 notum1a coding downstream 307287 57948377 ~ 57979190 (+)
XLOC_025429 BX649540.1 misc upstream 27387338 30248739 ~ 30249036 (+)
XLOC_025802 NA non-coding upstream 678816 56949955 ~ 56957558 (+)
XLOC_025799 NA non-coding upstream 814171 56821699 ~ 56822203 (+)
XLOC_025796 CU019632.1 non-coding upstream 1013502 56619195 ~ 56622872 (+)
XLOC_025814 NA non-coding downstream 340168 57981258 ~ 57986847 (+)
XLOC_025816 NA non-coding downstream 353288 57994378 ~ 57995547 (+)
XLOC_025822 NA non-coding downstream 546897 58187987 ~ 58192699 (+)
XLOC_025823 NA non-coding downstream 547564 58188654 ~ 58193860 (+)

Expression


Co-expression Network