XLOC_025810 (tmc6a)


Basic Information

Item Value
gene id XLOC_025810
gene name tmc6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57779673 ~ 57816877 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050683
ATGCTCCGTAAGCACTCGACTCCATCTCCGCGTTTGTGCCACCCAAGGGTCCGTGTCGGTCAGGGAGTCCGCAAATTGCCCAGCTTTGATATGAAGATTTACTTTCACACTTGTTTCCTGAAAGTTGTGCGCCACCCTTCAAGGAAGTACACGTCACTCCAACACACCACACGAGCTGTGCCACAGGCGACAGTCAAAATGGCTGCATCCCGCATCATGGAGACCATTCCTGGGGAAGATGGAGACCTGTTTGAACTGGAAGCTGTTTGGAGGCCAAACCGAGAAGTCAGATTTGATCTGACACATGCGAATGAAGACATAGAGGCACATTACAATGAGCccaaacacagacacactctgCAGAGGAGCAGCTGGTCCTCTTCAACCCAGAAGGTTCTGTCATCCATGCCCAGCCGCTCTATGAAGTGGAATCAAGCTGCTGCAGTCAACCAGAGCAGATCCACCAAAACACAACAAAGAAGACCTCTCTCCATCTGCACTGAAGACCAGGATGTCTTTACAGATCAGGACGACTACGTAGATGACGAGTTGCTGAAGAAACTGCAAGGTTTGTCTGTTGGTGAAAGTGCACAGCTGCTGCGGGAAATGCCTCTTAGTGTATCTGAGAAGCGTCAGATGAGAGAACTGGTGGTCTGTTGGGAATCTGGAAAGCCTCGCTCTGCTAACAGACCCCTGTGCCTCTATTGGtttcaaacttgtttgaagaagGTTGTGCATAGTGACTGGTCTGGAAGACAGAAGTCCTTACAGCTTTGGCAGAAAGTGTTTAAAAACATCAGCGCTCATTTTGGCATGGGAGTTCTGTCTTACTTCGTCTTCCTCAGGAGACTTTTACTCTTCAACCTCCTCCTCATGCTCATCAATGGCCTGTTCCTGCTCCTCCCACAACTCTCAAATCCATCTTCATCTACACGTACATCTTCAGAAGCAGAGCATAAATCTAACCTGTGGATGCTTACTGGCAtgGGCATTCTCACAGACTCGGTTATGTTTTATGGCCACTATTCCGACTGTCAAAATGGAAGTAGCGAATGTTTTGAGAATTACAACATTCCTCtggcctatattttcacttttggAACTGGCATGTTTGTCACATGTGTAAAGCTTGTTTACAACATGTCTAAAGCATTCGGAAAGAGCCAATCATCTACGAATACCAGAAGTCTTGTTTTTAAGGTTTTTTGCTCATGGGATTTTAAAGTCTACAAGAAACGGTCTGTAAGActgcagtcagtgaacatctgcACTCAGCTGAAGGAGATGTTGTCAGAGCTCAGCTGCAAAAAACAAAAGAGGAACTTGTGTTCGATGTTGAGATGGTTGAGTTTACACTTGCTGGTATGGTCCATTTGTCTGCTGTGCATGGGCGCCTGCATCTTTGCAGTGAATTACTTCCACCTTGTCAGGCCGATCAATTCTCATGATGCTGAGCCTGTGTATTTGCTGATCCTGCCTTTGGCCGTGTCTGCCTACAGTCGTCTGCTGCCTGTTCTCTTCGACATGCTATCCAGAGTGGAGCAATACAACTCACCAGACATCCGCATTTATGTGTCTATCGCAAGGAATCTGTTGTTGAAGGGCTGCATTTTTACTGCCTTGTGTCTCTGGTTTGGAGAAATTAAaccgaaaaaaaatgaacagTGCTGGGAGACAATGGTGGGTCAGGAGCTTTACCGTTTGATTGTGATGGATCTAATATTTGAAGTGCTGTACATCATCTTGGCGCAGTTCTTTTGGGGGTTTTGTGTAAGAAATGTCACACTGAGAAGAAGAAAACTGGAGTTTGCCATTGCTCAAGAAGTCCTGGAGCTCATCTACAGCCAAACTCTTGTGTGGTTTGGTGTGCTGTTTTCACCACTGTTGCCTGCAGTGCAAATTGGGAAACTTTATGTCCTTTTCTACCTCAAAAAGACCAGCTTGATGGTGAATTTCCATGCCCCCAAAAAACACTGGAGAGCCTCTCAGATGAGCAATCTCTTCATCAAACTCCTTTTCATCCCGTCCTTCACTGGAGCTCTTACATGTGTCATATACGTAATGTGGAGTGTCAAGCCCTCATCAGGCTGTGGGCCCTTCAGGAATTTTGACAGTATGCTGTTGATCATTGACCAGGCGAAAAATAGTCACAGTTTAAACTGGCTCAACTCGGCTTACATTCACTGGGTGTACAATCCTTTGTTCCTCTTCCTTATATCAGGAGCATTTTTAGCTATTATATACATTCACATGCAAGTTGTGGATGGCCAAAAGGTGATAACAGGAAGGTTGCAGAAGCAGATAAACTTTGAAGGTGAAGATAAGAAGTTCCTTATAGATAAAATCCAGGCGCTCAATGAGCTGAAATCTCAGCAGTGA
>TCONS_00050684
TAAACGACCAggctctctttttttattttaaatgtgtacagAAACTTTGCACGGCTCATTTTCTACATGTATTTTCTTTGAAGCGCAGTATAGCAGCAGCTTTTAAGACAGTCAAAATGGCTGCATCCCGCATCATGGAGACCATTCCTGGGGAAGATGGAGACCTGTTTGAACTGGAAGCTGTTTGGAGGCCAAACCGAGAAGTCAGATGTGGTTGATCTGACACATGCGAATGAAGACATAGAGGCACATTACAATGAGCccaaacacagacacactctgCAGAGGAGCAGCTGGTCCTCTTCAACCCAGAAGGTTCTGTCATCCATGCCCAGCCGCTCTATGAAGTGGAATCAAGCTGCTGCAGTCAACCAGAGCAGATCCACCAAAACACAACAAAGAAGACCTCTCTCCATCTGCACTGAAGACCAGGATGTCTTTACAGATCAGGACGACTACGTAGATGACGAGTTGCTGAAGAAACTGCAAGGTTTGTCTGTTGGTGAAAGTGCACAGCTGCTGCGGGAAATGCCTCTTAGTGTATCTGAGAAGCGTCAGATGAGAGAACTGGTGGTCTGTTGGGAATCTGGAAAGCCTCGCTCTGCTAACAGACCCCTGTGCCTCTATTGGtttcaaacttgtttgaagaagGTTGTGCATAGTGACTGGTCTGGAAGACAGAAGTCCTTACAGCTTTGGCAGAAAGTGTTTAAAAACATCAGCGCTCATTTTGGCATGGGAGTT
>TCONS_00050685
GCTGCAAAAAACAAAAGAGGAACTTGTGTTCGATGTTGAGATGGTTGAGTTTACACTTGCTGGTATGGTCCATTTGTCTGCTGTGCATGGGCGCCTGCATCTTTGCAGTGAATTACTTCCACCTTGTCAGGCCGATCAATTCTCATGATGCTGAGCCTGTGTATTTGCTGATCCTGCCTTTGGCCGTGTCTGCCTACAGTCGTCTGCTGCCTGTTCTCTTCGACATGCTATCCAGAGTGGAGCAATACAACTCACCAGACATCCGCATTTATGTGTCTATCGCAAGGAATCTGTTGTTGAAGGGCTGCATTTTTACTGCCTTGTGTCTCTGGTTTGGAGAAATTAAaccgaaaaaaaatgaacagTGCTGGGAGACAATGGTGGGTCAGGAGCTTTACCGTTTGATTGTGATGGATCTAATATTTGAAGTGCTGTACATCATCTTGGCGCAGTTCTTTTGGGGGTTTTGTGTAAGAAATGTCACACTGAGAAGAAGAAAACTGGAGTTTGCCATTGCTCAAGAAGTCCTGGAGCTCATCTACAGCCAAACTCTTGTGTGGTTTGGTGTGCTGTTTTCACCACTGTTGCCTGCAGTGCAAATTGGGAAACTTTATGTCCTTTTCTACCTCAAAAAGACCAGCTTGATGGTGAATTTCCATGCCCCCAAAAAACACTGGAGAGCCTCTCAGATGAGCAATCTCTTCATCAAACTCCTTTTCATCCCGTCCTTCACTGGAGCTCTTACATGTGTCATATACGTAATGTGGAGTGTCAAGCCCTCATCAGGCTGTGGGCCCTTCAGGAATTTTGACAGTATGCTGTTGATCATTGACCAGGCGAAAAATAGTCACAGTTTAAACTGGCTCAACTCGGCTTACATTCACTGGGTGTACAATCCTTTGTTCCTCTTCCTTATATCAGGAGCATTTTTAGCTATTATATACATTCACATGCAAGTTGTGGATGGCCAAAAGGTGATAACAGGAAGGTTGCAGAAGCAGATAAACTTTGAAGGTGAAGATAAGAAGTTCCTTATAGATAAAATCCAGGCGCTCAATGAGCTGAAATCTCAGCAGTGAGGGCTGCCTGTTTTCATGACATGTCACCTGTTGATCACTTGTGCTATCAAGGAAGAAAAAATCcccttaaaaacaacaaaaaaagcacaaCATAATACCTGAAAAACTGGCTCAACCAGTACATGCACGTTTATTTATGCCTGTCTTCTGCATTTTTTTCTAGGATTGAAGATGTGATGAATAATAAAAGAGAATAATTGCAAA

Function

symbol description
tmc6a Predicted to enable mechanosensitive ion channel activity. Predicted to be located in membrane. Predicted to be integral component of plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000069787 ENSDARG00000095806

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050683 False 2379 mRNA 0.45 19 57779673 57816570
TCONS_00050684 False 744 mRNA 0.47 7 57788761 57795677
TCONS_00050685 True 1283 mRNA 0.43 11 57797252 57816877

Neighbor

gene id symbol gene type direction distance location
XLOC_025809 NA coding upstream 11007 57766624 ~ 57768666 (+)
XLOC_025808 CT573423.1 coding upstream 138583 57636374 ~ 57641090 (+)
XLOC_025806 NA coding upstream 298677 57426160 ~ 57480996 (+)
XLOC_025807 NA coding upstream 343369 57434261 ~ 57436304 (+)
XLOC_025805 NA coding upstream 456177 57268363 ~ 57323496 (+)
XLOC_025811 CU571328.1 coding downstream 4036 57820913 ~ 57823547 (+)
XLOC_025812 cenpx coding downstream 9061 57825938 ~ 57830023 (+)
XLOC_025813 notum1a coding downstream 131500 57948377 ~ 57979190 (+)
XLOC_025814 NA coding downstream 164381 57981258 ~ 57986847 (+)
XLOC_025815 myadml2 coding downstream 174197 57991074 ~ 57991985 (+)
XLOC_025429 BX649540.1 misc upstream 27530637 30248739 ~ 30249036 (+)
XLOC_025802 NA non-coding upstream 822115 56949955 ~ 56957558 (+)
XLOC_025816 NA non-coding downstream 177501 57994378 ~ 57995547 (+)
XLOC_025822 NA non-coding downstream 371110 58187987 ~ 58192699 (+)
XLOC_025823 NA non-coding downstream 371777 58188654 ~ 58193860 (+)
XLOC_025824 NA non-coding downstream 393498 58210375 ~ 58212686 (+)

Expression


Co-expression Network