XLOC_025814


Basic Information

Item Value
gene id XLOC_025814
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57981258 ~ 57986847 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052815
acaggcagtgtgaaggtatttcccttgtacagtctaaccgatctacttctactttattttaacaatttatttggaccgtttattcttttcttgttcacaatcacagatattttagtgacagtttctgaacttgtctgagtttaataCATATGAGAGATTgctgcacattcactaacgttacacatctataatgatatactgtattcaaacagcaataaatttagttaaataaacatgcttatataaagtgtagtgcaattataaatacccctttattaaccataggatgttaaacagaaacggtagaacgtgatgacgtcaatGATATGCAAATTAACGTATGACGTACCCCATctcttcccccccccccccccccccccaatcatcagggggccccgtcagcgatccctgcaggggggcctccgcattttgcgctacgccactgctcgtatccctcctaatgcttattggGCTCATCTGTCTTCGAGCtgagggctctctcccgggacagcatgccaaacttgctaaaatagtcaagcattatctaagtgtgaactcttgaaatggttcATATTGCCCTACAAAGTCAAAGTGCAGCAACTGCAGAAACACTAAAGCTGAGAAAatgcctttaaaatgttttagaccAGCCAGCCAAACATGTTACTTGGAATATTCGTGGTTTTGTTTCTCTTACAAGACCATATCGACTTTGTCACAATGCAGAACATATTTTAGGCCTTGACTTAGTTTTGACAAGCTGTGTAGTTACAGCCCTTTAAACAGCATTCTATTATAccttaaatgtacatttatgtaCCCATTACCTTGCATCGTAACTGTCTGGTTGACCTTTTGTCCATAGGTTATCATTAAAAcaagtacctttatttctgagagattATAATGTCTATCTTAAAGTGTCTCAAAGGAATTTAGGAGTCAAAATCTCTTATTCTGACACAGTGACTATtgtaaattagaaaaataatattgtgtCGTCTGAACCTGACATAAACCCATCCTTGTTAATGAAGTATCTCTAActtatttaaagctaaaatgtGTCACCATAATAATAAATCTGTCATCATCTACTTTTTACAATGccgtattatttattttaatcagtaaACTCTAACTTCTGAAGAATGCCCAAGCTTTCGTTTTTGTGTATGGTCATTTATACTtgcaaaagacagaaaaaaaattaacggTGTGATAGTAAACATTACTTTGAGACATTTAGTTGCTCTACTGGTACTCCATAGCTCTCATTCTCAGTTGTGGTCAATTGAGGACACAACAATCAATGGCGACAATAAAGCGACATGCATGAAACAATTTTAAACTATTGACACTTACAGTATGACTAGTTTCCACTGATCACTGCAGTTTAGTAGGGTACAGTGTGCagcttttctgtttccactgtcTAAAAGTACCTCTTTTTGGAAAACCTTTTGTAAGGGTATCTTGAACAACATTACGGTagcaaaaggtggagctagactcAATGCTGAATGCTATTGTATAACAGAAGCGTCACTTGTGCATGCAACAAGACAAGCAAAAGACAAGCCTGATCAGGGTGACCTGTACTGAACCGTCATTATGGTTCCTTTCCATTGAGCATTATGGTTCAGTAAAATACAGTAGATTACAGTGTGCATTTATTTCCAGTTTCTCTTTAAAAAGTACCAAAACAGCCACTTTTTTTGAGATCCTTTAGGAAGGTTACCTACAACAGTACAGTACCAAAAGGTTGATGGCTTGCAGCAATGAAccatggtcgacctgagctcaaacaaaactTGTCTCTTCTTGTGACAAACAGCCACATGCCAATAATATGTGAATATCTTATTTAAGCCAAAATGGAGTCGATCTCAACTTTCAGGCATAAAAACTGCCTACCAAGTAAAGACCAACTTATATTTTTGCTTCTAGTCCTCGCTATAGGTATGCCTTCACACAGTTGTAAATCCTTTGCCATACCCAGACACAAACCTCTCAAAAAAGGTAACTACACATTTGCCACAATTCAAAGCGCAAGATGTGTGATTGTAGTGGTAACAACTATAGGTGGGTTGAGTGGTGCTAGTGGAACACGGCGGGTGGCTTGAGGTTTTAAGAAGTCTGAGTTTACATGATTGTCCAATCATTTTCGATTCATCATCCTTCCACCACTCCGACTCCGCACCTTTAACAGATCATTTCTCTTGCCCAGGGAGGAATGGGGGAACTTTTCTGGGAGTTTTTCTGGGAGTTTTCTGACTAGTGTTACCCAATTCTAGTCCTCGGGACTCCCCGCCCagacctgattcagatcatcagttcATTAACAGAGTTCCATGAACGGATTCTTGTGTGTAAAATAaaagacatacaaaatgtgccTGGCGGGGAATCTCGAGAACCGCAATTGACAACCGCTATTTTGGACAAAGTAGTTGATTGAGTCTTTTCGAACTCAGAGCCCAGACTCAGAGACTGCAcaccaaaacagatttttttcctTAAATCTGCAGGTTTGAACTTGTAAAAGAATGATTGCAGTGTAACACAGACAGAATGCAGAAGTATGCTTAGAATTGGCTACATCAGGGGTGCCCTAACTTCTAGAggactggtgtcctgcaaagtttagttcccaccccaaatagacacacctgggctagctaatcaagctctgttTAAGCTTACTAAAAACATTCGTgatggtgtgttgaggcaagttggagcaaaaatctgtaggacaccaggcctccaggaccgagtttgggcaacTATGGGCTACGTGCAAGGTATTTACCTTAGTACAgtgatcacttgatgcagaagtgtaaatcaaGCTTATGGGTATGCTACGGCCCAAACTCAAAACTGGCTCGAATAACAAAAACATTCAAGGTTTGAGCCGAATATATGGAAGACACAGACGTTTGAATGGTTAAATTGATGTTCTGTCAATATGTTTAATTTTCCATAAATCATAAGTTTTCAAAAgagacaaaacattaacaaaaatcaagTAGAAAGGTAGGGCAGCTAAGGTAAACAGGTCTCTGACTAAACTGTTTTAAATGGACAGATCTTACCTAAACTCCcgtgaaaggaataaaaataggtgagtcttccgggccactgcttaccttcgctaaactaaataaataacaaaacgtgaCTATGAAAAATAAACCTCTACCTGCTACAAagcaaagtatcaaaataaacaaactagttaACACATTATGAATTAAGAATCAAAAGATTAACAGGAACAAAACACTAAAAGGAGCGGCATCTAGATGAATGACCGCCGGGCTTGCGGAGGACCGCCAGCCAGACCGCCTGAGCCCAAGCCACCACCGAGCTGAGGTAGGGCGAGAGACTGCAAGACaaaaggagagagagacagagacgccATTGTTGTCAGCGTTATATAGTGGGAATCCCCAATGACGTCACGGGCATCATCCAATCCTGGATAAGCCGGGTGAAACACTCCTCCTAGAACTCAATCGCAAGCACAAACCGGCaattaataaatagattaattaaataacacagacctACATAACAGGGTACAATTGGCAGTGGAATAGCAAGCCTGATCAGGGTGACCCGTACCGAACCATACTGTCCTAAACTGAACTGCACTCCTTAGTGTAAACAAGACGTTAAAGTCACAATGCAGAAAAAAGGCCAGGGGTGCccagccctgttcctggagatctaccttcctgcagatttcaccTGGaatccttatcaaacacacctgtctttaattaccaagcGCTCTTTCAGAACCtacttagttggtttagttgtgtttgatcagagttggagctaaaTGCTGCATGAAAAGGGTTCAGCACCATTAAGCACCCCTGGcatagaccagtgtttctcaactacgTTCCTAAAGGACCAACAACACTTCGTCCTGTTCTAGGCCTTTTACCTAGTGTACCTTTTCgatgtcttctttgtctgtcacacctattACAGCTCTTTCAATCTCagctaatgatctgaatcaggtgtgttcaGCTTAGGAGACAAAAAGCGTGCAGacctggtggtcctccaggaatgtggttgagaaacgctGGCATAGACTGATCAAGACGGAAGACAGATGATTGGACAGGGTTGAGAATGTTAAATtacatgaaggtgagtaaatgccctgctgaaaaatccagcttaaaccagcctaggatggttgggtggttttagctggtcaatcagcctggttttagagggggtttggccatttccaggctggtttccagctatttccagcctggtcttagctggtcaggctggaaagtgaccagctaaaaccatctaaaaccagtttgaccatcctggtttaagctggacatagctggttttggctgggctcccagcctggctaggctggtgaagctagttttagctagtcatctcccagcctgtccagctaaaaccaggctggaaatggctggaaactagccaggaagtggccaaaacccctctaaaacctggactggtcgaccagctaaaacaagccaaccatccaaggctggtttaagctggatttttcagcagggtgatgCCAGAACTAATTGTATACATTTATAACACTATGCTAAATGCTAATTCCACTTAGTCACATTCCAGGCACACAATATCCTGATGTGACCCTGCAACTCAGGTTAGGGTGTACCATTTTGGTGTGTACCTTAAGTTGAACTCTGTATTAAAGGGGGAATTCACTCATATTCAACTGTGCAGAAAGCTCGGTGCATGTTTCTCTTAGTAACACGATGGTACAATAAGCAACACTGTATGAGTGAAATTCCACTTCACGTAATAAACCATTGTACTGACATGAAAGTAAGGCAAGGATTGAAAGAAGGATGATTCTATCAATGCAAATTCAGACTCGATTGGGAGTTGGTTACTGTGTGCATGTATGTTTAGGTTTAGAAGCTCGCTCTTTTGAGGGTACTTTTGTCAGATGAAGACTCTAGACTGTTCAAATATTTAATAGAAAATGACTTCTTAATATAAGTTGTATGAAGctgttttatgaatatttttaaaaatgataaaaaaataaccaaGACAAGAAAACCACAGAGATGTGAAGGTATTACTAATTACTATTTTCATCTGTAACATACTTTTAAAACCGAAAACTCAGTCTACATTGCATATTTATTGTTATGTAAATCATATTTATAATGCTGTTTTCACAGAGAAGTGATTCTTTGTACATTGTAAATAGTTCTGTTTCTTGTGTTGATTGCATGTACGTGTCCCTGAGAGAACACATTACAGTTATTCCAAAGAAATGTTCGGTATTGCCTTTTCATTTTATGACATGTTTAATCTCCAAAGCTGAAGTATCCTTCCTCAgcatatccagcctgatctcacgagaaaacagaagtattttacgttttgccagtttagtggctaatataAATATACGAATTTGTAcaatttcagtcgtacgaaatgatacgatttttaaaaggaggcgtggcacctaaccccacccctaaccccaaccgtcgttgggggatgagcaaat

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0048731 system development biological_process
GO:0001708 cell fate specification biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048513 animal organ development biological_process
GO:0003401 axis elongation biological_process
GO:0090036 regulation of protein kinase C signaling biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:1901166 neural crest cell migration involved in autonomic nervous system development biological_process
GO:1903045 neural crest cell migration involved in sympathetic nervous system development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052815 True 5590 lncRNA 0.40 1 57981258 57986847

Neighbor

gene id symbol gene type direction distance location
XLOC_025813 notum1a coding upstream 2068 57948377 ~ 57979190 (+)
XLOC_025812 cenpx coding upstream 151235 57825938 ~ 57830023 (+)
XLOC_025811 CU571328.1 coding upstream 157711 57820913 ~ 57823547 (+)
XLOC_025810 tmc6a coding upstream 164381 57779673 ~ 57816877 (+)
XLOC_025809 NA coding upstream 212592 57766624 ~ 57768666 (+)
XLOC_025815 myadml2 coding downstream 4227 57991074 ~ 57991985 (+)
XLOC_025816 NA coding downstream 7531 57994378 ~ 57995547 (+)
XLOC_025817 pycr1a coding downstream 11133 57997980 ~ 58006138 (+)
XLOC_025818 si:ch211-256e16.7 coding downstream 105365 58092212 ~ 58097473 (+)
XLOC_025819 si:ch211-256e16.4 coding downstream 132724 58119571 ~ 58131524 (+)
XLOC_025429 BX649540.1 misc upstream 27732222 30248739 ~ 30249036 (+)
XLOC_025808 CT573423.1 non-coding upstream 340168 57636374 ~ 57641090 (+)
XLOC_025806 NA non-coding upstream 500262 57426160 ~ 57480996 (+)
XLOC_025807 NA non-coding upstream 544954 57434261 ~ 57436304 (+)
XLOC_025802 NA non-coding upstream 1023700 56949955 ~ 56957558 (+)
XLOC_025822 NA non-coding downstream 201140 58187987 ~ 58192699 (+)
XLOC_025823 NA non-coding downstream 201807 58188654 ~ 58193860 (+)
XLOC_025824 NA non-coding downstream 223528 58210375 ~ 58212686 (+)
XLOC_025826 NA non-coding downstream 313191 58300038 ~ 58305878 (+)

Expression


Co-expression Network