XLOC_025816


Basic Information

Item Value
gene id XLOC_025816
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 57994378 ~ 57995547 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052816
ttttaacttgttgtccagggtcacattAGGAAcatcatgttttacgcagcggatgtccttccagctgcaacccatcactggcaaacatccatacacacttactcacacatacactatggacaatttagcctacccatttcacctatagcacatgtttttggacttgtgggaaaaaaaacggagcacccggaggaaacccacacgaacatggggagaacatgcaaactccacacagaaacaccagctgagactcgaaccagcgatcttcttgctgtgagaaagAACTGTGCAGCCCATGTCTTTAAAGTTGTCCAGAATAAGTTCTTGGCAACCCATATTACTAATTAgaagttttgatatatttgttcaaagtaggaaatttactaaatgtCTTTTATGGAACACaacatttacttaatattctattgattttggcaaaaaataaaaatcaataattttgacccattTCATGGATTTTAGGTCACTGCCAAAATTAGTGTAatttgtgatccagggtcacaaataTAGATGACCATTTATTCCAATTGTTAAGGTGCTCAAAGAACCTCTCTTTATGCATTTTGTGATACATCTACAAAGGCTTCAATGGGTTGATCAgtgtgtttaataataataataacaacaacgacaatgcatttaatttattttgcactTTATCTACACCAGAGTGCTACTTTAAGCATAATACAGACAAAAACACATTCAACTGAAGCAGTAAAAAAAGCCCTCCACAgcagcaacagtaaatataactaAGACTAAAATACCATCTTAAATAGCATGAAGTGCATTACACAACCTCGGAGCTGCTACAGAGAAAGCTCTTTCtcccatgtttttttatttttttaatctaaaataaaGTAGTTTGTAACTTCATTAAATTGTTACTTACGCTCAAATCACCAATGAAATAGTACTTTTGGATTCAGTGCACATCAGAATTGACAGAACTGTTCACTTAGgtattgtctatatatatatatatatacaccatgtttttttcttttaaaaaaatactgtagttttATTTGTCATGGTGCTTAGCGAGCACTTCCCTTTATACTGTACTTCTCTATCAATCTACTCAGGCCCCA

Function

GO:

id name namespace
GO:0071840 cellular component organization or biogenesis biological_process
GO:0072378 blood coagulation, fibrin clot formation biological_process
GO:0030168 platelet activation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0032501 multicellular organismal process biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005577 fibrinogen complex cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0045239 tricarboxylic acid cycle enzyme complex cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko00561 Glycerolipid metabolism
ko03230 Viral genome structure
ko03320 PPAR signaling pathway
ko04979 Cholesterol metabolism
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052816 True 1118 lncRNA 0.35 2 57994378 57995547

Neighbor

gene id symbol gene type direction distance location
XLOC_025815 myadml2 coding upstream 2393 57991074 ~ 57991985 (+)
XLOC_025814 NA coding upstream 7531 57981258 ~ 57986847 (+)
XLOC_025813 notum1a coding upstream 15188 57948377 ~ 57979190 (+)
XLOC_025812 cenpx coding upstream 164355 57825938 ~ 57830023 (+)
XLOC_025811 CU571328.1 coding upstream 170831 57820913 ~ 57823547 (+)
XLOC_025817 pycr1a coding downstream 2433 57997980 ~ 58006138 (+)
XLOC_025818 si:ch211-256e16.7 coding downstream 96665 58092212 ~ 58097473 (+)
XLOC_025819 si:ch211-256e16.4 coding downstream 124024 58119571 ~ 58131524 (+)
XLOC_025820 si:ch211-256e16.3 coding downstream 137680 58133227 ~ 58154489 (+)
XLOC_025821 uqcrc2a coding downstream 171741 58167288 ~ 58185030 (+)
XLOC_025429 BX649540.1 misc upstream 27745342 30248739 ~ 30249036 (+)
XLOC_025809 NA non-coding upstream 225712 57766624 ~ 57768666 (+)
XLOC_025808 CT573423.1 non-coding upstream 353288 57636374 ~ 57641090 (+)
XLOC_025806 NA non-coding upstream 513382 57426160 ~ 57480996 (+)
XLOC_025822 NA non-coding downstream 192440 58187987 ~ 58192699 (+)
XLOC_025823 NA non-coding downstream 193107 58188654 ~ 58193860 (+)
XLOC_025824 NA non-coding downstream 214828 58210375 ~ 58212686 (+)
XLOC_025826 NA non-coding downstream 304491 58300038 ~ 58305878 (+)
XLOC_025827 AL772300.2 non-coding downstream 349315 58344862 ~ 58353587 (+)
XLOC_025807 NA non-coding upstream 558074 57434261 ~ 57436304 (+)

Expression


Co-expression Network