XLOC_025818 (si:ch211-256e16.7)


Basic Information

Item Value
gene id XLOC_025818
gene name si:ch211-256e16.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58092212 ~ 58097473 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050694
CGCATCAGAGTGTTATATATCCAtcactgtgtttgtgtttcatcTACAGTTTGAAAAAGAGCAGAGCCTCTCAACACAGGTCAAAATGATAACTGTAAGtgttttcaaatCGTGAAGTGGAACCAAAATCAATTCTGTCAAATTCAAACAATTGCAGCTGCCAAGAATTCATTTTGGGCACCAGACCTTGTTATAGCAGAGAGCATCAGTACTGAGTTTGGAGGAAAGGAGTCTCTAAACGTGCAGTTGATCTACTTTGGCTACACACTTTTGTCTGAGATACTTTCTCTGAACACCGCCTGTAAGCTGGACCTCTACAAGTTCCCCTTCGACACCCAGAGCTGCAATATAACACTTCAGTCTGCAGCGTATTCAAATATAGATCTGAAAATATTTATGCTGCATGATACAGGCGTTCTTACAAATTCTTCCAAGCAATCCTTTCAGTCCCAGGGGGAGTGGGAGCTCCTCAATATAAGTACAATCAAATCTAAATTCAGCCCTTGGTATAGCTACACAGATCAGCTGATATATCAGATCACCATCAGAAGAAGACCTCTGCTGCATGTCATCAACATTATGCTACCAGTGTTTTCCTTCCTTGTGCTGGACGTGACCTCCTTCTTCATGGATGTAGACGGAGCAGACAAGCTGAGCTTTAAAGTGACTTTACTTCTGGCTATTTCTGTGCTGCTGCTGATTCTTAATGACACCCTGCCCTCAACGGCTGATAAAGTTCCTCTGATTGGGATTTACTGCAGTGTGATTTTCAGTTTCATTGGTATCAGCATACTGGAGACCATCTTTGTGAATTTTCTGAAGGCTAGAGGAGCTGACAGTAGATCATCTGCATCAGCTGATGTTGCTGAACAAGATGGT

Function

symbol description
si:ch211-256e16.7 Predicted to enable serotonin-gated cation-selective channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096821

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050694 True 879 mRNA 0.42 6 58092212 58097473

Neighbor

gene id symbol gene type direction distance location
XLOC_025817 pycr1a coding upstream 86074 57997980 ~ 58006138 (+)
XLOC_025816 NA coding upstream 96665 57994378 ~ 57995547 (+)
XLOC_025815 myadml2 coding upstream 100227 57991074 ~ 57991985 (+)
XLOC_025814 NA coding upstream 105365 57981258 ~ 57986847 (+)
XLOC_025813 notum1a coding upstream 113022 57948377 ~ 57979190 (+)
XLOC_025819 si:ch211-256e16.4 coding downstream 22098 58119571 ~ 58131524 (+)
XLOC_025820 si:ch211-256e16.3 coding downstream 35754 58133227 ~ 58154489 (+)
XLOC_025821 uqcrc2a coding downstream 69815 58167288 ~ 58185030 (+)
XLOC_025822 NA coding downstream 90514 58187987 ~ 58192699 (+)
XLOC_025823 NA coding downstream 91181 58188654 ~ 58193860 (+)
XLOC_025429 BX649540.1 misc upstream 27843176 30248739 ~ 30249036 (+)
XLOC_025809 NA non-coding upstream 323546 57766624 ~ 57768666 (+)
XLOC_025808 CT573423.1 non-coding upstream 451122 57636374 ~ 57641090 (+)
XLOC_025807 NA non-coding upstream 655908 57434261 ~ 57436304 (+)
XLOC_025824 NA non-coding downstream 112902 58210375 ~ 58212686 (+)
XLOC_025826 NA non-coding downstream 202565 58300038 ~ 58305878 (+)
XLOC_025827 AL772300.2 non-coding downstream 247389 58344862 ~ 58353587 (+)

Expression


Co-expression Network