XLOC_025819 (si:ch211-256e16.4)


Basic Information

Item Value
gene id XLOC_025819
gene name si:ch211-256e16.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58119571 ~ 58131524 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050695
CATTTGTCTGAGATGGAGTTTTCTCTCTTCACTACACATCTACACTGGCTACTGCTATTTCTTGCCTCAAGagGATGGGTGTCTGATGCACAAATTTGCAATGCCTCAGCTTTTGCTAATTCATACGAGCAACTTTATAAATATCTTGGCCTGGGCGGAAATGACAATCGGACAACATACATGCGGCCTATGTTCCCAGGGCAAACCTACACCCGTGTTTTGGTGGACTTGTATGTGACCTCCATCGTAGAAGTGTTTGAAAAAGAGCAGAGGCTCTCAACACAGGTCAAAATGATAACCGTTTGGTTCGACTCGAATGTGCTGTGGAACTCATATAAGTTTTGTCAAATTCTAACGATTGCAGCTCCAAGGAATTTATTTTGGAGACCAGACATTGTTATAGCAGAGAGCGTCAAGACAGAGATCGGAACAGTAGAGTCTTCCTATGTGCAATTGGTCTTTTTTGGCTATGTGGTTTTGCCTGAAGTTTTGTCTCTGAACACAGTCTGTAAGCTGAACCTCTACAGGTTTCCCTTCGACACCCAGAGCTGCAATATAACAATTCAGTCTGTGGCGTATTCAAATGTGGATCTTAAACTTGAGACATTGCATGATACAGGCGTTCTTACGAATTCTTCCAAGCAATCCTTTCAGTCCCAGGGAGAGTGGGAGCTCCTCAATATAAGCACATCTAAGTCTAAAGTCTTCCTTATGTTTGGCTACGCAGATCAGCTGATATATCAGATCACCATCAAAAGAAGACCTCTACTGCATGTCATCAACATTATCCTACCAGTGTTCTTCTTCCTTGTGCTGGACGTGACCTCCTACTTCATAGACACAGACGGAGCCGACAAGCTCAGCTTTAAAGTGACTTTACTGCTGGCTATTTCTGTGCTGCTGCTGATTCTTAATGATACCCTGCCCTCTACGACTTATGAACTTCCTCTGATCGGAATTTACTGCAGTGCGATTTTCAGTCTCATTGGCATCAGCATACTGGAGACCATTCTTGTGAATTTTTTGAGGGCTAAAGGAGCTAAGATCCTATCTGCATCAGCTGCTGTTACTGGACAAGATGatGGTGTTAGTGGCCCTCCGGTCGATCAAGACAGGGATCAAAAAGAGTTTCAGATTGCAATGTGGTGGATAAAAGTGGCAAGAATAACAGACATGATGTTCTTGATTCTCTATCTACTCACCATTGTTGTGTTTCTGTCTGTGCTTGGGAAAGTTTGGTACATACACTGATCTCATATTAATGAAATGACAAAAATGGAAACTTGTTAACACTAGAGCAACCAGAATTCTATAACTACTAGAAAATGATCACATGTGGTCAtacataatatatttacattcaaagcttcttttgagatattaaaattaagcttgcATCAGGGGtattgctagacataaagctctactgggaACGGACCCCCTCAAAAACATCACCATATATAGATCATTGTATATCAGACCCCCTAGGTTTTTGCAATTTCGCGATCAATGAATCCAACGCAATTCGACAAAAAGTT

Function

symbol description
si:ch211-256e16.4 Predicted to enable serotonin-gated cation-selective channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022850 serotonin-gated cation-selective channel activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-267 Predicted to enable serotonin-gated cation-selective channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000078428

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050695 True 1538 mRNA 0.42 9 58119571 58131524

Neighbor

gene id symbol gene type direction distance location
XLOC_025818 si:ch211-256e16.7 coding upstream 22098 58092212 ~ 58097473 (+)
XLOC_025817 pycr1a coding upstream 113433 57997980 ~ 58006138 (+)
XLOC_025816 NA coding upstream 124024 57994378 ~ 57995547 (+)
XLOC_025815 myadml2 coding upstream 127586 57991074 ~ 57991985 (+)
XLOC_025814 NA coding upstream 132724 57981258 ~ 57986847 (+)
XLOC_025820 si:ch211-256e16.3 coding downstream 1703 58133227 ~ 58154489 (+)
XLOC_025821 uqcrc2a coding downstream 35764 58167288 ~ 58185030 (+)
XLOC_025822 NA coding downstream 56463 58187987 ~ 58192699 (+)
XLOC_025823 NA coding downstream 57130 58188654 ~ 58193860 (+)
XLOC_025824 NA coding downstream 78851 58210375 ~ 58212686 (+)
XLOC_025429 BX649540.1 misc upstream 27870535 30248739 ~ 30249036 (+)
XLOC_025809 NA non-coding upstream 350905 57766624 ~ 57768666 (+)
XLOC_025808 CT573423.1 non-coding upstream 478481 57636374 ~ 57641090 (+)
XLOC_025807 NA non-coding upstream 683267 57434261 ~ 57436304 (+)
XLOC_025826 NA non-coding downstream 168514 58300038 ~ 58305878 (+)
XLOC_025827 AL772300.2 non-coding downstream 213338 58344862 ~ 58353587 (+)

Expression


Co-expression Network