XLOC_025821 (uqcrc2a)


Basic Information

Item Value
gene id XLOC_025821
gene name uqcrc2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58167288 ~ 58185030 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050697
CGGAATCGGCCATAACTGTCTTTCACAGCAGCGGCTGAAGGAGAGAAACGGAGTCATGATGACGGGCTTCAGAGGTTTCACTCATCTCTCCtGACGGTGTGATCGAATACCTTGTGGATGTGACTACTGCTCCTGACTTCAGACCCTGGGAGTTGGCAGATCTCACCCCGAGGGTCAAGATCGACAAAGCCTTGGCTGAACAGAGCCCACAGATAGGTGTCCTGGAGAAGCTGCATGAAGCTGCTTATAAAAACGCCTTGTCCAACTCGCTCTACTGTCCAGACATCATGCTGGGGAAGATCAGTGTTGATCATCTTCAGCAGTTCTTTGACAATAATTACACCAGTGCAAGAATGGCTCTCGTTGGATTAGGGGTCAGTCATGCGGCTCTGAAGACGGTCGGTGAGCGATTCTTCGGTTCTCATAAAGGAGCCGGAGCACCAGGAGCCAAAGCTGTGTACCGCGGCGgtgAGCTGCGGGTTCAGGGCACTGGATCTCTGGTTCACGCTCTGCTGGCTTGTGAAGGAGCTGTGACGGGCTCAGCTGAGGCCAACGCCTTCAGTGtgctgcagaggattctgggagCTGGACCACATGTCAAGAGAGGATCCAACATCAGCAGCAAACTCAGCCAGGGCATCGCCAAGGCAACCGCTCAGCCATTT
>TCONS_00050698
CTGTCTTTCACAGCAGCGGCTGAAGGAGAGAAACGGAGTCATGATGACGGGCTTCAGAGGTTTCACTCATCTCTCCAGACGCTGTTATGCTGCCGCCGCCAGGAGGAACAAGGCTCTAACTGAACCTCTAAGCCATAAGTCTGCAGCTCCACCAGTGCTCCAGCCACAGGATGTCCAGGTGTCCAAGCTGCCCAGCGGTCTTGTGGTGGCCTCTCTGGAGAACTACTCCCCCGTCTCCAAAATCGGTGTGTTTGTGAAAGCCGGCAGCCGCTATGAGACTGCAGAAAACCTGGGCGTCACGCACATGCTCAGATTAGCAGCGAATATGACCACTAAAGGTGCGTCAGCCTTCAAGATCTGTCGCAGTCTGGAGGCTCTGGGTGCTAGTTTGAGTGTGACGTCTTCGAGGGAACACATGGTATATTCCCTGGACTTTCTTAGAGATGATTTtGACGGTGTGATCGAATACCTTGTGGATGTGACTACTGCTCCTGACTTCAGACCCTGGGAGTTGGCAGATCTCACCCCGAGGGTCAAGATCGACAAAGCCTTGGCTGAACAGAGCCCACAGATAGGTGTCCTGGAGAAGCTGCATGAAGCTGCTTATAAAAACGCCTTGTCCAACTCGCTCTACTGTCCAGACATCATGCTGGGGAAGATCAGTGTTGATCATCTTCAGCAGTTCTTTGACAATAATTACACCAGTGCAAGAATGGCTCTCGTTGGATTAGGGGTCAGTCATGCGGCTCTGAAGACGGTCGGTGAGCGATTCTTCGGTTCTCATAAAGGAGCCGGAGCACCAGGAGCCAAAGCTGTGTACCGCGGCGgtgAGCTGCGGGTTCAGGGCACTGGATCTCTGGTTCACGCTCTGCTGGCTTGTGAAGGAGCTGTGACGGGCTCAGCTGAGGCCAACGCCTTCAGTGtgctgcagaggattctgggagCTGGACCACATGTCAAGAGAGGATCCAACATCAGCAGCAAACTCAGCCAGGGCATCGCCAAGGCAACCGCTCAGCCATTTGACGCCACAGCTTTCAGCACTACTTACTCAGACTCGGGGCTCTTCGGGCTCTACATCATCTCTCAAGCAGACTCGACCCGCGAGgtcaTCAGTTCGGCTGTGGCTCAGGTGACTGCTGTGGCGGAGGGAAAGCTGACCACTGATGACCTTACCAGAGCAAAGAATCAGCTGAAGGCAGATTATCTGATGTCTCTGGAGAGTTCAGACGTGCTGCTGGAGGAGCTGGGGGTTCAGCTTTTAAACAGCGGCGTCTACAGTTCACCACAGACTGTGACACAAAGCATCGACTCGGTGACCTCCAGCGACGTCCTCAAAGCTGCGAGGAGGTTTGTTGAAGGCCAGAAGAGCATGTCGAGTTGTGGATATCTGGAAAACACACCGTTTCTGGATGAGCTGTGAGGAAGTCCCGCTCTACAGTGCAGATGTTGTTCAGCTCTTTCCTGAGTGTACAACTGATCTGAGAGCTGTCTGAAAGCCGGACTGCTGTCCACACTTGTTTTCTGCTCAGATCATCATGAAGTCTGGTGTTCAGTCTCGCTTTATTAACATCAGTTTCATCTGTTTGACTGTATGTCTGATGTAGATTCATTAAAACAGATCTATCAGTGA
>TCONS_00050699
gctccttcacgggactccacacttgtaaacaatcgctcgtgccattcgcgcggctctcggtcccgcccagactcgtcagcgctaccaagccgaccaatcacagagcttacactacgcgtcgttgcgacgtgtagttacatttttttgagaggtgcacgtcagtgccggcgacggccacggccaagggctatgcgtcagcgttgtagcatacgccggtgtttgacgcagaagtataaatcagccttaacccagggattctcaactggtgggcctcagcgatcctgcagAGACGCTGTTATGCTGCCGCCGCCAGGAGGAACAAGGCTCTAACTGAACCTCTAAGCCATAAGTCTGCAGCTCCACCAGTGCTCCAGCCACAGGATGTCCAGGTACACACGCT
>TCONS_00050700
ccggccctccaggactgaatgTGGACATCCCTGATGTAGACAGTCTGTCCTGtagattatatttaaaaattactcttgtgtgtgtttttgtgtgcagtGACGGTGTGATCGAATACCTTGTGGATGTGACTACTGCTCCTGACTTCAGACCCTGGGAGTTGGCAGATCTCACCCCGAGGGTCAAGATCGACAAAGCCTTGGCTGAACAGAGCCCACAGATAGGTGTCCTGGAGAAGCTGCATGAAGCTGCTTATAAAAACGCCTTGTCCAACTCGCTCTACTGTCCAGACATCATGCTGGGGAAGATCAGTGTTGATCATCTTCAGCAGTTCTTTGACAATAATTACACCAGTGCAAGAATGGCTCTCGTTGGATTAGGGGTCAGTCATGCGGCTCTGAAGACGGTCGGTGAGCGATTCTTCGGTTCTCATAAAGGAGCCGGAGCACCAGGAGCCAAAGCTGTGTACCGCGGCGgtgAGCTGCGGGTTCAGGGCACTGGATCTCTGGTTCACGCTCTGCTGGCTTGTGAAGGAGCTGTGACGGGCTCAGCTGAGGCCAACGCCTTCAGTGtgctgcagaggattctgggagCTGGACCACATGTCAAGAGAGGATCCAACATCAGCAGCAAACTCAGCCAGGGCATCGCCAAGGCAACCGCTCAGCCATTTGACGCCACAGCTTTCAGCACTACTTACTCAGACTCGGGGCTCTTCGGGCTCTACATCATCTCTCAAGCAGACTCGACCCGCGAGgtcaTCAGTTCGGCTGTGGCTCAGGTGACTGCTGTGGCGGAGGGAAAGCTGACCACTGATGACCTTACCAGAGCAAAGTGAGTCAGTGAAACA

Function

symbol description
uqcrc2a Predicted to enable metal ion binding activity. Predicted to be active in mitochondrion. Is expressed in female organism. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 5. Orthologous to human UQCRC2 (ubiquinol-cytochrome c reductase core protein 2).

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-405 Predicted to enable metal ion binding activity. Predicted to be active in mitochondrion. Is expressed in female organism. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 5. Orthologous to human UQCRC2 (ubiquinol-cytochrome c reductase core protein 2).

Ensembl:

ensembl_id ENSDARG00000014794

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050697 False 665 mRNA 0.54 6 58167288 58178161
TCONS_00050698 False 1633 mRNA 0.52 14 58167303 58185030
TCONS_00050699 False 400 processed_transcript 0.57 2 58168523 58170414
TCONS_00050700 True 848 lncRNA 0.53 7 58174077 58180383

Neighbor

gene id symbol gene type direction distance location
XLOC_025820 si:ch211-256e16.3 coding upstream 12799 58133227 ~ 58154489 (+)
XLOC_025819 si:ch211-256e16.4 coding upstream 35764 58119571 ~ 58131524 (+)
XLOC_025818 si:ch211-256e16.7 coding upstream 69815 58092212 ~ 58097473 (+)
XLOC_025817 pycr1a coding upstream 161150 57997980 ~ 58006138 (+)
XLOC_025816 NA coding upstream 171741 57994378 ~ 57995547 (+)
XLOC_025822 NA coding downstream 2957 58187987 ~ 58192699 (+)
XLOC_025823 NA coding downstream 3624 58188654 ~ 58193860 (+)
XLOC_025824 NA coding downstream 25345 58210375 ~ 58212686 (+)
XLOC_025825 CABZ01038494.1 coding downstream 46530 58231560 ~ 58292496 (+)
XLOC_025826 NA coding downstream 115008 58300038 ~ 58305878 (+)
XLOC_025429 BX649540.1 misc upstream 27918252 30248739 ~ 30249036 (+)
XLOC_025814 NA non-coding upstream 180441 57981258 ~ 57986847 (+)
XLOC_025809 NA non-coding upstream 398622 57766624 ~ 57768666 (+)
XLOC_025808 CT573423.1 non-coding upstream 526198 57636374 ~ 57641090 (+)
XLOC_025807 NA non-coding upstream 730984 57434261 ~ 57436304 (+)
XLOC_025827 AL772300.2 non-coding downstream 159832 58344862 ~ 58353587 (+)

Expression


Co-expression Network