XLOC_025823


Basic Information

Item Value
gene id XLOC_025823
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58188654 ~ 58193860 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052818
TTTGATAATCagttgaacaaacaataaactgaTGTGCTTTAAACAAGAGTAAAAATGAAGCACTGAAAACACTCTGCATTCATTAATATCAAACAACAATAATCAAACACATTATTCGAGACCGTTTTTTAAATCACTAAAAGGTCTTAATCTGCTGAAAATACAGTCTGAAGAGTATAAGACAGAATTAAAGAAAGAAGAAGAGTGAAGCTCAGCAGATGAAAAGCAGAAACTGGAGAAAACATCTTCATGCTGTGTGACACAGAGACACTGAAGAGCCTGAATAATAATTAACTCTAAATCCAGCGTGGAGTGTGTCGGTGAATGTGGTGTtgaatgtgtgtaagtgtgtgagtttgtgtgtgtcagAGACGCTGTAGAAGGACAGAGAGCCGCTCGACTCGTCCACAAACACTCCTACTGTCCTGCTGGAGTCTGGACGAGCCGAGATGCGTGTGCGTTTATTATTGTGCCAGACAGAGAATGAGTGATCAGAGCACTGAAGACTCCAGGACTGATCATTATATCCAAACCCACAGTCATGACCTCCTTTCCTCTTGATTCCTTTATAACACACTGATATTCCAGCACATCCGCTCCATTGagtctcccagtaacagcgtccagtcAGACTCTCTTTACTCACAACCTGAGGACGAAcatcatcaaatctgtctggatgatcaggataagACTGACTCTCCTCCACCCACGTCGCctttct

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052818 True 724 lncRNA 0.42 2 58188654 58193860

Neighbor

gene id symbol gene type direction distance location
XLOC_025821 uqcrc2a coding upstream 3624 58167288 ~ 58185030 (+)
XLOC_025820 si:ch211-256e16.3 coding upstream 34165 58133227 ~ 58154489 (+)
XLOC_025819 si:ch211-256e16.4 coding upstream 57130 58119571 ~ 58131524 (+)
XLOC_025818 si:ch211-256e16.7 coding upstream 91181 58092212 ~ 58097473 (+)
XLOC_025817 pycr1a coding upstream 182516 57997980 ~ 58006138 (+)
XLOC_025824 NA coding downstream 16515 58210375 ~ 58212686 (+)
XLOC_025825 CABZ01038494.1 coding downstream 37700 58231560 ~ 58292496 (+)
XLOC_025826 NA coding downstream 106178 58300038 ~ 58305878 (+)
XLOC_025827 AL772300.2 coding downstream 151002 58344862 ~ 58353587 (+)
XLOC_025828 vwa3a coding downstream 160992 58354852 ~ 58372651 (+)
XLOC_025429 BX649540.1 misc upstream 27939618 30248739 ~ 30249036 (+)
XLOC_025816 NA non-coding upstream 193107 57994378 ~ 57995547 (+)
XLOC_025814 NA non-coding upstream 201807 57981258 ~ 57986847 (+)
XLOC_025809 NA non-coding upstream 419988 57766624 ~ 57768666 (+)
XLOC_025808 CT573423.1 non-coding upstream 547564 57636374 ~ 57641090 (+)
XLOC_025807 NA non-coding upstream 752350 57434261 ~ 57436304 (+)
XLOC_025830 NA non-coding downstream 231140 58425000 ~ 58429124 (+)
XLOC_025832 AL772300.1 non-coding downstream 276075 58469935 ~ 58470519 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G236455 NA non-coding NC_053135.1 CM020932.1 21296177 ~ 21330483 (+)