XLOC_025824


Basic Information

Item Value
gene id XLOC_025824
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58210375 ~ 58212686 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052819
attaaaaTAGTGATCTGTACTGCTGTATTGTTGGCTTGAGATGACTAAACTATTTTTATGCCGCCACAACAAAAAGACACCTAAAATCATTCCTCATGATACTCACCCAGACTCAGAGCTCACAGCAGATCCATCACTCATAAAAGGAGGCAGATGCATTGAGTTGTTGCTCTTCATAGACAAACAGCTGAACTCTGGGGATGCTGCTCTCTGGTGGTCAACTGGAGCCTCGCTCTCCTCAATCACACTCATTTCACTGTCAGTTTTCATCTTCTCTTTTTCTGCAAACATTTCCTGGATGTGTAATTTGATTTTTTAGGTCTC
>TCONS_00052820
CCagactcagagttcacagcagCTCCATCACTCATATAAGGAGGCAGATGCATTGAGTTGTTGCTCTTCATAGACAAACAGCTGAACTCTGGGGATGCTGCTCTCTGGTGGTCAACTGGAGCCTCGCTCTCCTCAATCACACTCATTTCACTGTCAGTTTTCATCTTCTCTTTTTCTGCAAACATTTCCTGGATGTGTAATTTGATTTTTTAGGTCTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052819 False 324 lncRNA 0.41 2 58210375 58212686
TCONS_00052820 True 218 lncRNA 0.44 2 58211305 58212686

Neighbor

gene id symbol gene type direction distance location
XLOC_025823 NA coding upstream 16515 58188654 ~ 58193860 (+)
XLOC_025822 NA coding upstream 17676 58187987 ~ 58192699 (+)
XLOC_025821 uqcrc2a coding upstream 25345 58167288 ~ 58185030 (+)
XLOC_025820 si:ch211-256e16.3 coding upstream 55886 58133227 ~ 58154489 (+)
XLOC_025819 si:ch211-256e16.4 coding upstream 78851 58119571 ~ 58131524 (+)
XLOC_025825 CABZ01038494.1 coding downstream 18874 58231560 ~ 58292496 (+)
XLOC_025826 NA coding downstream 87352 58300038 ~ 58305878 (+)
XLOC_025827 AL772300.2 coding downstream 132176 58344862 ~ 58353587 (+)
XLOC_025828 vwa3a coding downstream 142166 58354852 ~ 58372651 (+)
XLOC_025829 sdr42e2 coding downstream 166764 58379450 ~ 58416968 (+)
XLOC_025429 BX649540.1 misc upstream 27961339 30248739 ~ 30249036 (+)
XLOC_025816 NA non-coding upstream 214828 57994378 ~ 57995547 (+)
XLOC_025814 NA non-coding upstream 223528 57981258 ~ 57986847 (+)
XLOC_025809 NA non-coding upstream 441709 57766624 ~ 57768666 (+)
XLOC_025830 NA non-coding downstream 212314 58425000 ~ 58429124 (+)
XLOC_025832 AL772300.1 non-coding downstream 257249 58469935 ~ 58470519 (+)
XLOC_025834 NA non-coding downstream 341744 58554430 ~ 58595650 (+)

Expression


Co-expression Network