XLOC_025826


Basic Information

Item Value
gene id XLOC_025826
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58300038 ~ 58305878 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052821
CAACATAAAGCTGCAggagttttgagaaataaagccATAGTGTAAAGAACAGCATAAGCATTTagaagagagagaaaagtaacctGCAGTAAGTCTGATGTAATGCTGAGTGTGTGTCCTTATATATAAATCAACAACAGAAGCTGAGTTGAAAAGAGCAGTACTGAATGGAGGTCTGTAGCTATGGAGATTCCAAACACTGCAGCTGTCAGTCACTCACAGTTCAGTCTGAACCTCACAAGGACATCCACTGACTCCTCGTACAATAACACCCTGTgctgttttactttatttctgaTTCCTGCGCCGGGATAATATTGTTATCTGTGTGCTGTATTGTGCGCGCGCACGATCTGCTGTTCATCACGCACGAGCTTCACAACACAACGACACAAGAGATCGGAGAGTGTGGAGCTCCTGCAGAGGCTGATGGAGAGCTCAGAGGACTGGCTGAAGTCCAGCGGTCTGTCTGTGTCTGACCTGCTGTCTCTCTGCACAACTGATGCTCCAGTGTGAGTTTACTGCACATCCCTACATGACACAATGTCTAAAATCAGTGCTGTTTGAGTTTTAAAGAGGGCCTGCTATGCAAAAGTattatttataaggggtttaaacactgtTGTGTGGCAGAAGTCCAGCTTCTAAGGgtcaaaatgtatatttatttgtattttttaataatctcACTTGATaataacagtctgcagaaacactttgattgacattctccttttatacatgtca
>TCONS_00052822
GCTGTCAGTCACTCACAGTTCAGTCTGAACCTCACAAGGACATCCACTGACTCCTCGTACAATAACACCCTGTgctgttttactttatttctgaTTCCTGCGCCGGGATAATATTGTTATCTGTGTGCTGTATTGTGCGCGCGCACGATCTGCTGTTCATCACGCACGAGCTTCACAACACAACGACACAAGAGATCGGAGAGTGTGGAGAGGCTGATGGAGAGCTCAGAGGACTGGCTGAAGTCCAGCGGTCTGTCTGTGTCTGACCTGCTGTCTCTCTGCACAACTGATGCTCCAGTctcagAGACCGGATCGGGGCTGAGCAGACAGCTGCAGATCAGCAGTGAGTCTCTGGCTCAGTTTGAGGAGCAGCTTTACATGTGAGCATCTTCTTCTTCACTCCACTGCACTCATCAGGAACACACTTCATCATCCTCACAGAAAGACGCTGTAAGAACATCACGCTCAATCATCTACCCATCTCTGAATGTTCTGATGGGTTTTTCTTGATTAAGCAGACACTAAGGGAACACTCTGTTTTCTCA
>TCONS_00052823
TCACAGTTCAGTCTGAACCTCACAAGGACATCCACTGACTCCTCGTACAATAACACCCTGTgctgttttactttatttctgaTTCCTGCGCCGGGATAATATTGTTATCTGTGTGCTGTATTGTGCGCGCGCACGATCTGCTGTTCATCACGCACGAGCTTCACAACACAACGACACAAGAGATCGGAGAGTGTGGAGCTCCTGCAGAGGCTGATGGAGAGCTCAGAGGACTGGCTGAAGTCCAGCGGTCTGTCTGTGTCTGACCTGCTGTCTCTCTGCACAACTGATGCTCCAGTctcagAGACCGGATCGGGGCTGAGCAGACAGCTGCAGATCAGCAGTGAGTCTCTGGCTCAGTTTGAGGAGCAGCTTTACATGTGAGCATCTTCTTCTTCACTCCACTGCACTCATCAGGAACACACTTCATCATCCTCACAGAAAGACGCTGTAAGAACATCACGCTCAATCATCTACCCATCTCTGAATGTTCTGATGGGTTTTTCTTGATTAAGCAGACACTAAGGGAACACTCTGTTTTCTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052821 False 747 lncRNA 0.42 2 58300038 58303363
TCONS_00052822 False 545 lncRNA 0.49 3 58300242 58305878
TCONS_00052823 True 542 lncRNA 0.49 3 58300254 58305878

Neighbor

gene id symbol gene type direction distance location
XLOC_025825 CABZ01038494.1 coding upstream 7542 58231560 ~ 58292496 (+)
XLOC_025824 NA coding upstream 87352 58210375 ~ 58212686 (+)
XLOC_025823 NA coding upstream 106178 58188654 ~ 58193860 (+)
XLOC_025822 NA coding upstream 107339 58187987 ~ 58192699 (+)
XLOC_025821 uqcrc2a coding upstream 115008 58167288 ~ 58185030 (+)
XLOC_025827 AL772300.2 coding downstream 38984 58344862 ~ 58353587 (+)
XLOC_025828 vwa3a coding downstream 48974 58354852 ~ 58372651 (+)
XLOC_025829 sdr42e2 coding downstream 73572 58379450 ~ 58416968 (+)
XLOC_025830 NA coding downstream 119122 58425000 ~ 58429124 (+)
XLOC_025831 zgc:171489 coding downstream 149550 58455428 ~ 58468835 (+)
XLOC_025429 BX649540.1 misc upstream 28051002 30248739 ~ 30249036 (+)
XLOC_025816 NA non-coding upstream 304491 57994378 ~ 57995547 (+)
XLOC_025814 NA non-coding upstream 313191 57981258 ~ 57986847 (+)
XLOC_025832 AL772300.1 non-coding downstream 164057 58469935 ~ 58470519 (+)
XLOC_025834 NA non-coding downstream 248552 58554430 ~ 58595650 (+)
XLOC_025835 NA non-coding downstream 274711 58580589 ~ 58615939 (+)

Expression


Co-expression Network