XLOC_025827 (AL772300.2)


Basic Information

Item Value
gene id XLOC_025827
gene name AL772300.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58344862 ~ 58353587 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050702
ATGGATTCAGTCACTTCTTATGTGTCTGAGCGCTGCAGCACATCAAACCTGAACCTCCATGTGTGCCTGTTCACCGAAGTGAAGCACACTGAGTCGCAGGCCGAAACTGCACGGGCTCTGAGTGATCTGGCACACGCTGGACACGGGCGCTTCATCTGGACCACAGAAACCGGCGTCCTGGAGAGTGATGACATCAGTGTCCTGATTGAAGAAATGCAGACGGCGGCTAATTATTATCAGAAGAGCTGTGAGTTAGTGGACTCTCTGATGCAGAAGAGCTCCAGCGGAGGTTCAGGAGAGAGCAGCTCTTCATCTATCAGACCCCCAACCTCCAGCCCAAAATCCAAAGTGCCTTTACCTCGACCCACAACACTCAGCCTGGCCAGACAGGTCAGATTCTGCACAGTCAAACATCACACATCTGATCTGCACACGGTCACACATTAATTTGAGCatgaaatctaaaaattacaatgtttatttttctatagcttacattgttattcttaagatgaatatttacagtaatccatgcaagttacagtttttctcagacgctttggtgcatttctcacaacactatttacatttgcacaacagttaatgcaaactgcaaaacaattagtgcaaactgcaaaacctagctaataacctgcaaaagcgcgtcacttgctcaaaatagatagttcattcctcaaaagcaagtattgatgtcaatcaaagtgtcagtgtcatcaaaatgaaaagtcctgtcaccattgtttatgaacaagatagtcaaatggcttagtcctGTTTTCATTATGGCGgtttactctctacattttttcaatgcaaaaaaagtcagaagTTGGTGACACctgctgaaaatgctcaagacagcactatatactatttgcacagccatttgaacactacagtaaagttagacatcactgcatttagtaagggatctgagtacaagacactgaatatgtatgtttcacatttttattgcatttgctctttacaattctaatttattcacagcattgtgcaaaagaataaatacacccttttttacaacaaac

Function

GO:

id name namespace
GO:0019228 neuronal action potential biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0086010 membrane depolarization during action potential biological_process
GO:0051899 membrane depolarization biological_process
GO:0048666 neuron development biological_process
GO:0007409 axonogenesis biological_process
GO:1990351 transporter complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034706 sodium channel complex cellular_component
GO:0043005 neuron projection cellular_component
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:1902495 transmembrane transporter complex cellular_component
GO:0061134 peptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117344

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050702 True 1070 lncRNA 0.41 4 58344862 58353587

Neighbor

gene id symbol gene type direction distance location
XLOC_025826 NA coding upstream 38984 58300038 ~ 58305878 (+)
XLOC_025825 CABZ01038494.1 coding upstream 52366 58231560 ~ 58292496 (+)
XLOC_025824 NA coding upstream 132176 58210375 ~ 58212686 (+)
XLOC_025823 NA coding upstream 151002 58188654 ~ 58193860 (+)
XLOC_025822 NA coding upstream 152163 58187987 ~ 58192699 (+)
XLOC_025828 vwa3a coding downstream 1265 58354852 ~ 58372651 (+)
XLOC_025829 sdr42e2 coding downstream 25863 58379450 ~ 58416968 (+)
XLOC_025830 NA coding downstream 71413 58425000 ~ 58429124 (+)
XLOC_025831 zgc:171489 coding downstream 101841 58455428 ~ 58468835 (+)
XLOC_025832 AL772300.1 coding downstream 116348 58469935 ~ 58470519 (+)
XLOC_025429 BX649540.1 misc upstream 28095826 30248739 ~ 30249036 (+)
XLOC_025816 NA non-coding upstream 349315 57994378 ~ 57995547 (+)
XLOC_025834 NA non-coding downstream 200843 58554430 ~ 58595650 (+)
XLOC_025835 NA non-coding downstream 227002 58580589 ~ 58615939 (+)
XLOC_025836 NA non-coding downstream 234617 58588204 ~ 58624381 (+)

Expression


Co-expression Network