XLOC_025828 (vwa3a)


Basic Information

Item Value
gene id XLOC_025828
gene name vwa3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58354852 ~ 58372651 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050703
ttCATTCAAAGTCTGCTCAAAGGAGAGTCAGCGTGTCTCAGTCTGTCTTCTTCATGGAGGACGGACACTTGGGTTGGTGTGATTAGATCACTCAgaaacatacacaaaaacaattgtacgaattgtattttaaaacacttattatcTCATCTAGGGTTTGTCTTCAAGAGCTATCCGAAACCAAAGAGTGTGCGCAAGTCAATCGCCAGCATCAAACTGCCCAAACATGAAGGCATCTGCTCAACTAAACAGTGGCTGAAACGGTTTGGCATCAGGAATCTGCATCTGGATCTTCACCGGCTGCTCTCTGGTCCCGAATGCCGCCATCAGGACACACTGGTGCCGTCCGTCCAGAGGAGAGTGTCTGCGAAATACTGCGCCATATTCCCCAGCATCCAGATCAATGGGGCTGTGAAACACCTGCACCTGAGTCCAGCTGAGCTGAAGCAGTACATCAGTCAGACGGAGACTCTGATGCTGCGCTACTGCCAGAGACTGCAGTGGCTGCTGACCGGCAGCAGGCGTATGTTTGGGTCAGTTCTGGAGAAGGAGGTCTGCCTTCTGCTGGATGTGTCTGGGTCAATGGCCTCCTGCTTCCCTGAGCTCCAGAAAGGACTAACATTACTGATCTGGGATCAGCTGCATGCCAACAGTGTGAGGTTTAATATGCTGGCGTTCTCTAGAGGGCTGTGTATGTGGCGTCCGGCTCTGGTTCAGTCGACAGAGGATCAGTGTGTTCATGCAGTGCAGTGGTTGAGTCAGATCAACACACACGGCTCTTCATCCACACTGACAGCGCTGCAGACAGCCTGTGGGCTGGCAGATGGCGTTGGTGTGTATCTGATCAGTGACGGGCGCAGCGACTGCAGCCACAGTTTGATTCTGACAGAGATGGAGACTCTGAGAAGAGAGAAGAGCTTCACCGTACACACCATCGCACTCAACTGCTCTGATAGGTCAAGCAGTGATTTTCTGAAGCGTCTGGCCCATAAAAATGGAGGACGTTTCCATCAGGCTCCTGAAAGCACAGATCCAGATCTGATCAGAGAACAGCTGTCGGACCCGAGCAGTGCATTGAATCTTCCAGAGTTTGAAGGAGACGATTTAAAGAGACTGACAGAGGAGATCCAAAAGCTGAGATTGTTCCAGAAACAAGCCAAAGCCTtcagGGAAACTGTTTTGGAGTCAAGGAAACGAGAAGGAACATAAACGCTGATCTGAGCCTGTTCTTATCATGGAGCTTTACTTGCATATGGTGACATTGACATTTTAGTTAAATATTAGcagaaaatataatattttgatcATGATTTACAGAAAACACTCACTAAAATATAGCTGtgtattataattataagtttatacattacaaAAATCGTGTTAGGCACATTTAGAACAAGTATCGTatgatgatttattaaaaaatatattataagaaattattttggatcaaaatttATTATAATcacttatttttatgtattttgacAGGTACAGCTCAGATTGTGTTGTTTCGCTTTgacataaatatatctgttacaGTCAATGATAATGGAGCATTATTTCACTCATATTTAATCGTCTTATTTTCACAAAATGCGTTTTTGTGAACACTGAAGTACACATCTGTATTTaataagctttttatttatttaatatcactttatttaattagatttgtGGACTaacatgtcttcaaatgtcagatCTGTatcaaatttacatttatttatgttcaatttaatttaagcTTACTGTTATAAGGCTTTTAACAATAATTCTCTTTCCAAAGCAGCTTTTCAAAAGGTGTGTGCTATTGgttattacattataatatttataaactgttTGTTAAATATCCTTACCTGGAcgcacca

Function

symbol description
vwa3a Orthologous to human VWA3A (von Willebrand factor A domain containing 3A).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-527 Orthologous to human VWA3A (von Willebrand factor A domain containing 3A).

Ensembl:

ensembl_id ENSDARG00000087210

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050703 True 1877 mRNA 0.42 9 58354852 58372651

Neighbor

gene id symbol gene type direction distance location
XLOC_025827 AL772300.2 coding upstream 1265 58344862 ~ 58353587 (+)
XLOC_025826 NA coding upstream 48974 58300038 ~ 58305878 (+)
XLOC_025825 CABZ01038494.1 coding upstream 62356 58231560 ~ 58292496 (+)
XLOC_025824 NA coding upstream 142166 58210375 ~ 58212686 (+)
XLOC_025823 NA coding upstream 160992 58188654 ~ 58193860 (+)
XLOC_025829 sdr42e2 coding downstream 6799 58379450 ~ 58416968 (+)
XLOC_025830 NA coding downstream 52349 58425000 ~ 58429124 (+)
XLOC_025831 zgc:171489 coding downstream 82777 58455428 ~ 58468835 (+)
XLOC_025832 AL772300.1 coding downstream 97284 58469935 ~ 58470519 (+)
XLOC_025833 si:ch211-165g14.1 coding downstream 99654 58472305 ~ 58487848 (+)
XLOC_025429 BX649540.1 misc upstream 28105816 30248739 ~ 30249036 (+)
XLOC_025822 NA non-coding upstream 162153 58187987 ~ 58192699 (+)
XLOC_025834 NA non-coding downstream 181779 58554430 ~ 58595650 (+)
XLOC_025835 NA non-coding downstream 207938 58580589 ~ 58615939 (+)
XLOC_025836 NA non-coding downstream 215553 58588204 ~ 58624381 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_02143799_02166631 NA coding CI01000112 null 2143745 ~ 2166631 (-)