XLOC_025829 (sdr42e2)


Basic Information

Item Value
gene id XLOC_025829
gene name sdr42e2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58379450 ~ 58416968 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050704
caaacagttttggagaatttaatgttttcTCATTCAAAGAGTGACCTGACCAATACCTTTAAATACCTGCTACACCCCCAAATCGTCTCCAGAAAAAATTTCTTTCTGTATTTTCCTTTTCCGACAACTGAACTAATTTCGCGCCTCGTGGGACTATTCGACTATTCAACCACAAAATCGAGCAGGACACAAGAACTCCTAAAGGATCTCCAACCTCCACGTGCATCAAGAAAAAGAGAACTGGAGGCATCTGAACCCACGTGTGCATTATGAAGGAGAACAGGTCCTCGTGTCAGATGGAGCAGCTGCCCTGTGCATGTCTACTGGACTGCCACAGGCAGACCCACTCCCGCAGCGCCGCCGCCACCATCCCTCTCAGGCACAGAGCTAACGGGGCTGTGGGCGCCTTGTGCAGCAGTCCCAACTGTGTGGTGTCCGACAGGCTGGAGGACTCGGGGAAAGGGCGGTTCGGGACCGGCAGGGTGCTGGTCACAGGGGGAGCCGGGTACTTCGGATACAGACTGGGCCGTGCTCTGGCCAGACAGGGGGCCGCCGTGGTGCTGCTGGATCTCCACCAGCCGCCCTGGGACATCCCCGATGGAGCCGTCTTCCAGCAGATCGACATTCGGGATTATGATACTCTGTATAAGATCAGTGCAGGAGTGGACGTCATATTTCACACTGCGTCCTATGGGATGTCAGGACCTGAACAGCTGAGGAAAAAGCAGATCGAGTCAGTTAACGTTGGCGGCACAAACAATGTCATAAATGTGTGTGCGGAGCGGGGCATCTCCAGACTCATCTACACCAGCACAGTGAATGTGGCGTTTGCCGGACGGCCCATTGAGGATGGAGATGAAGACTCAGTACCCTGTGTGCCGCTAGACATGCACATCGACCATTACTCCAGGACTAAAGCTATCGCTGAGCGCATGGTGCTCGCTGCCAATAGGAGATCAACAAAAGgTGGTGGTCTTCTACACACATGTGTCCTGCGCCCCTCTGGTATCTACGGTCCTGAAGAGAGAAGGCATTTACACCGAGTGATGGTAAACGTGGAAAGACGGTTCTTCAGCTTTTGTTTTGGGGACCCCAATGCCAAGATGAACTGGGTGCATGTGGATAATCTGGTGACGGCGCATGTTTTAGCAGCACAAGCACTTACTGCGGAGAAAGCCTTTGTGGCGAGTGGCCAGGCGTACTTCATCAATGATGGGGAGTCGGTTAATGTCTTTGAATGGCTAACACCACTGTTTGAAAGACTGGGTTACGGTCGGCCACTGATTCACCTTCCTGTGTCTCTGGTCTACTCAGCAGCCATTCTGATGGAGCGGCTGCATGTGGCTTTGAGACCTATAGTGGAAATCCCTTTGCTTCTGACCAGAAATGAGGTGAGGAACATCGCAGTCAGTCACACCTTCAAGATCGAGAAGGCTCAGCGTGATCTGGGCTTCAGTCCTCAGAGATTCAGCCTGAAGGATTCGGTGGATCAGTATCTGCAGAGTCGACCGGTGCGCTCTGCCTCGTCCTTCAGCGCACAACAcctgatgctgctgctgctgatctGCGGGTTCTTCGCTCTCTTCATGCACTGCTTAGCCTGAAAATGGCAAGCCTCACGTACAAACAAAAGCTAGCTGAGTTTCAGTTAAAAGGGGCcagttatgcaaaaatcacttttataaggggtttaggCACAGTTGTG
>TCONS_00050705
ATGGAGCAGCTGCCCTGTGCATGTCTACTGGACTGCCACAGGCAGACCCACTCCCGCAGCGCCGCCGCCACCATCCCTCTCAGGCACAGAGCTAACGGGGCTGTGGGCGCCTTGTGCAGCAGTCCCAACTGTGTGGTGTCCGACAGGCTGGAGGACTCGGGGAAAGGGCGGTTCGGGACCGGCAGGGTGCTGGTCACAGGGGGAGCCGGGTACTTCGGATACAGACTGGGCCGTGCTCTGGCCAGACAGGGGGCCGCCGTGGTGCTGCTGGATCTCCACCAGCCGCCCTGGGACATCCCCGATGGAGCCGTCTTCCAGCAGATCGACATTCGGGATTATGATACTCTGTATAAGATCAGTGCAGGAGTGGACGTCATATTTCACACTGCGTCCTATGGGATGTCAGGACCTGAACAGCTGAGGAAAAAGCAGATCGAGTCAGTTAACGTTGGCGGCACAAACAATGTCATAAATGTGTGTGCGGAGCGGGGCATCTCCAGACTCATCTACACCAGCACAGTGAATGTGGCGTTTGCCGGACGGCCCATTGAGGATGGAGATGAAGACTCAGTACCCTGTGTGCCGCTAGACATGCACATCGACCATTACTCCAGGACTAAAGCTATCGCTGAGCGCATGGTGCTCGCTGCCAATAGGAGATCAACAAAAGgTGGTGGTCTTCTACACACATGTGTCCTGCGCCCCTCTGGTATCTACGGTCCTGAAGAGAGAAGGCATTTACACCGAGTGATGGTAAACGTGGAAAGACGGTTCTTCAGCTTTTGTTTTGGGGACCCCAATGCCAAGATGAACTGGGTGCATGTGGATAATCTGGTGACGGCGCATGTTTTAGCAGCACAAGCACTTACTGCGGAGAAAGCCTTTGTGGCGAGTGGCCAGGCGTACTTCATCAATGATGGGGAGTCGGTTAATGTCTTTGAATGGCTAACACCACTGTTTGAAAGACTGGGTTACGGTCGGCCACTGATTCACCTTCCTGTGTCTCTGGTCTACTCAGCAGCCATTCTGATGGAGCGGCTGCATGTGGCTTTGAGACCTATAGTGGAAATCCCTTTGCTTCTGACCAGAAATGAGGTGAGGAACATCGCAGTCAGTCACACCTTCAAGATCGAGAAGGCTCAGCGTGATCTGGGCTTCAGTCCTCAGAGATTCAGCCTGAAGGATTCGGTGGATCAGTATCTGCAGAGTCGACCGGTGCGCTCTGCCTCGTCCTTCAGCGCACAACAcctgatgctgctgctgctgatctGCGGGTTCTTCGCTCTCTTCATGCACTGCTTAGCCTGA

Function

symbol description
sdr42e2 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to act upstream of or within steroid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SDR42E2 (short chain dehydrogenase/reductase family 42E, member 2).

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101203-3 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to act upstream of or within steroid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SDR42E2 (short chain dehydrogenase/reductase family 42E, member 2).

Ensembl:

ensembl_id ENSDARG00000059914

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050704 False 1705 mRNA 0.52 12 58379450 58416968
TCONS_00050705 True 1308 mRNA 0.55 11 58382572 58416867

Neighbor

gene id symbol gene type direction distance location
XLOC_025828 vwa3a coding upstream 6799 58354852 ~ 58372651 (+)
XLOC_025827 AL772300.2 coding upstream 25863 58344862 ~ 58353587 (+)
XLOC_025826 NA coding upstream 73572 58300038 ~ 58305878 (+)
XLOC_025825 CABZ01038494.1 coding upstream 86954 58231560 ~ 58292496 (+)
XLOC_025824 NA coding upstream 166764 58210375 ~ 58212686 (+)
XLOC_025830 NA coding downstream 8032 58425000 ~ 58429124 (+)
XLOC_025831 zgc:171489 coding downstream 38460 58455428 ~ 58468835 (+)
XLOC_025832 AL772300.1 coding downstream 52967 58469935 ~ 58470519 (+)
XLOC_025833 si:ch211-165g14.1 coding downstream 55337 58472305 ~ 58487848 (+)
XLOC_025834 NA coding downstream 137462 58554430 ~ 58595650 (+)
XLOC_025429 BX649540.1 misc upstream 28130414 30248739 ~ 30249036 (+)
XLOC_025823 NA non-coding upstream 185590 58188654 ~ 58193860 (+)
XLOC_025822 NA non-coding upstream 186751 58187987 ~ 58192699 (+)
XLOC_025835 NA non-coding downstream 163621 58580589 ~ 58615939 (+)
XLOC_025836 NA non-coding downstream 171236 58588204 ~ 58624381 (+)

Expression


Co-expression Network