Gene
RNA
| Item | Value |
|---|---|
| gene id | selenof |
| gene name | sep15 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 52793317 ~ 52818726 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| selenoprotein F-like |
| id | name | namespace |
|---|---|---|
| GO:0005788 | endoplasmic reticulum lumen | cellular_component |
| GO:0008430 | selenium binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001124454.4 | False | 1035 | mRNA | 0.44 | 5 | 52793745 | 52818707 |
| TU819478 | False | 1456 | lncRNA | 0.42 | 5 | 52793317 | 52818700 |
| TU819476 | False | 1421 | lncRNA | 0.42 | 5 | 52793378 | 52818726 |
| TU819477 | True | 1395 | lncRNA | 0.42 | 5 | 52793378 | 52818700 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110530084 | LOC106568816 | coding | downstream | 37143 | 52733010 ~ 52756602 (-) |
| trnav-cac-85 | NA | coding | downstream | 63775 | 52729898 ~ 52729970 (-) |
| trnav-cac-84 | NA | coding | downstream | 66715 | 52726958 ~ 52727030 (-) |
| trnav-cac-83 | NA | coding | downstream | 68300 | 52725373 ~ 52725445 (-) |
| trnav-aac-152 | NA | coding | downstream | 69606 | 52724067 ~ 52724139 (-) |
| LOC110530090 | LOC106568989 | coding | upstream | 87660 | 52906367 ~ 52917437 (-) |
| LOC110530094 | LOC106568986 | coding | upstream | 130294 | 52949001 ~ 52967823 (-) |
| LOC110530097 | NA | coding | upstream | 180892 | 52999599 ~ 53001669 (-) |
| LOC110530096 | LOC106569026 | coding | upstream | 196471 | 53015178 ~ 53018104 (-) |
| LOC110529119 | LOC106569026 | coding | upstream | 200799 | 53019506 ~ 53022146 (-) |
| G721289 | NA | non-coding | downstream | 14272 | 52779036 ~ 52779473 (-) |
| G721288 | NA | non-coding | downstream | 15149 | 52778378 ~ 52778596 (-) |
| G721260 | NA | non-coding | downstream | 66961 | 52719286 ~ 52726784 (-) |
| G721245 | NA | non-coding | downstream | 125299 | 52533209 ~ 52668446 (-) |
| G721238 | NA | non-coding | downstream | 137156 | 52589219 ~ 52656589 (-) |
| G721414 | NA | non-coding | upstream | 156090 | 52974797 ~ 52977530 (-) |
| G721425 | LOC106568985 | non-coding | upstream | 168210 | 52986917 ~ 52989556 (-) |
| G721435 | LOC106568983 | non-coding | upstream | 189982 | 53008689 ~ 53010120 (-) |
| G721407 | NA | non-coding | upstream | 195911 | 53014618 ~ 53100336 (-) |
| G721509 | NA | non-coding | upstream | 305667 | 53124374 ~ 53124686 (-) |
| G721275 | NA | other | downstream | 32294 | 52761039 ~ 52761451 (-) |
| LOC110530043 | LOC106568739 | other | downstream | 1534726 | 51252355 ~ 51259061 (-) |
| G719151 | NA | other | downstream | 1854274 | 50936928 ~ 50939471 (-) |
| LOC110530011 | LOC106568709 | other | downstream | 2904493 | 49866272 ~ 49937001 (-) |
| G718489 | NA | other | downstream | 2956049 | 49785674 ~ 49837696 (-) |
| LOC110529122 | LOC106568971 | other | upstream | 644475 | 53462034 ~ 53478913 (-) |
| G722459 | NA | other | upstream | 679441 | 53495804 ~ 53499730 (-) |
| G722602 | NA | other | upstream | 984736 | 53803443 ~ 53856065 (-) |
| G722670 | NA | other | upstream | 1107521 | 53926228 ~ 53927959 (-) |
| G722761 | NA | other | upstream | 1305672 | 54124379 ~ 54139341 (-) |
