XLOC_025831 (zgc:171489)


Basic Information

Item Value
gene id XLOC_025831
gene name zgc:171489
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58455428 ~ 58468835 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050706
TGGTGCAGTGCCTTGTATTTGGATGAGGTGAAATTGAACTCTGTTGTGGATATACACTCAACTGAAAAACATGTATTCTGTTCATGCTTTCTGATATAATCAATGGAATTAACTAATATGGATCACATATCAGCGACTGCACGAGTTTTATAATAGCGTctctttgtattattattattattagtattattattcagCTCTGACAGACATCTCATCAATCTCAGCATCATGAGAAACTTTGCTCATCCCGCCGCTTTGGCTTATTGCATGACGACGCTCGGTGCAGGCATGATGAACAGCATTTTCAGTTTCTACTATGTGAAGCTGTTCTTGAATAAGTACAGGATATCAGAGGCGGCTTTCCACCTGTCACAGGTGGTCTATATGATCTGGAATGCTCTGAATGATCCTCTGTTTGGATATTTGCAAGACAACTCTCGGATGGAGTGCTGCTCCCGGCGCAGGCTCTCTATCTTATACGGAGCCCCTCTGTACTGCCTGTCCTTCCTGCTTGCCTGGTTCCCCTGGAGGACGTACGAGACCGAAGACTGGCTGAGCGGCGTCCACCTCATGGTGACCCTCTGTGCTTTCGACGGCATGCTCACATTCGTGCTGCTGGCCCAGTGCGCTCTGTTCGCAGAGATCTCTGGAAACCACCACAACCGGCTAAGGCTCATCAAGTACAGCCAGTTGGCGTCTCTGGTGGGATCCTCCAGTGTGCTGTTCTGCGGCCTCCTCTCAAAAAACATGGAGGATTTCGCATCCTTCCAGGCCTTCAGCGTGCTGGTGGCTGTAGTGGCATGCGTCTGCATGCTGTACACGGGCCTCCACAGTGAGAGCCGTTTCGACAGCAAGAGCTCGGCCGATGACGCGCAGAGTCCGCCACTCTCACTGGCATCTGTGCTGTCCATGACCTGGCAGATCCTGACCAACAGAGACTTCCAGGTCTTTGTCTTCATGAACTTCTTCCAGGTCTTCATGGTGGCGTTCTGCAACAACTTCACCATGATCTTTGCAGAGCAACTCATTCCTCAGGACGTCCTGCCGTCACTTGCCAAGAGCATCATGTATGGAGCCGGATTCATCTGTCCGCAGATATTGGTGTTGTGCAGTCAGGATCTCCTGCGTAAGTTCGGCTACTTCAGACTGATCCTGATCTCCTTCTGTGTGGAGGCCGGAGCCGCGCTCATCATGCTACTGCTCGGCCCACACAACTACTACTTCCTCGCATTGTTCCTCACTTCCAACATGGTGCTGGTTCAGGCCGCCTTCAGTCTCTTCAATTTGCCTCTGGCAGACATCATTGACTCCGACCTACAGAAATACAAACGCAGCTCTCCTCTCTCCTCAATGGTTTTCGGGACCAATGCTCTCTTCACGAAGCCGGCTCAATCTCTGGCTCCAATGCTGGTGGTGTCCGTCCTCAACCAGTACGGATATGCAGAGATAAAGGATGCGGGGAAGAATGTAGATTCAGCTGCTCTGCGCAGCTGTATgtttctgcttgtgtgtgtggtgCCGCTGTGTGTGGCGCTGCTGCAGGTGTTGGTCTGGAGGCTCTTCTCTATACGAGACAGTCACACACTGGACGCCAAGTACACCGATGGATGATTGCAGATGTttatttcgtgtgtgtgtgtgtgtgtgtgcttctgtaaaggtacattttgattgTCAGAATGTACTGCAGTGAGAGGGTGTTTCTAGATAAAAAATGATTCAGGGATTTCTCATT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000052300

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050706 True 1735 mRNA 0.50 6 58455428 58468835

Neighbor

gene id symbol gene type direction distance location
XLOC_025830 NA coding upstream 26304 58425000 ~ 58429124 (+)
XLOC_025829 sdr42e2 coding upstream 38460 58379450 ~ 58416968 (+)
XLOC_025828 vwa3a coding upstream 82777 58354852 ~ 58372651 (+)
XLOC_025827 AL772300.2 coding upstream 101841 58344862 ~ 58353587 (+)
XLOC_025826 NA coding upstream 149550 58300038 ~ 58305878 (+)
XLOC_025832 AL772300.1 coding downstream 1100 58469935 ~ 58470519 (+)
XLOC_025833 si:ch211-165g14.1 coding downstream 3470 58472305 ~ 58487848 (+)
XLOC_025834 NA coding downstream 85595 58554430 ~ 58595650 (+)
XLOC_025835 NA coding downstream 111754 58580589 ~ 58615939 (+)
XLOC_025836 NA coding downstream 119369 58588204 ~ 58624381 (+)
XLOC_025429 BX649540.1 misc upstream 28206392 30248739 ~ 30249036 (+)
XLOC_025824 NA non-coding upstream 242742 58210375 ~ 58212686 (+)
XLOC_025823 NA non-coding upstream 261568 58188654 ~ 58193860 (+)
XLOC_025837 NA non-coding downstream 185689 58654524 ~ 58680069 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_02096880_02108616 MFSD13B coding CI01000112 null 2096566 ~ 2108616 (-)
bowfin (Amia calva) AMCG00018396 NA coding CM030135.1 CM030135.1 9960221 ~ 9968405 (+)