LOC110530090 (LOC106568989)


Basic Information

Item Value
gene id LOC110530090
gene name LOC106568989
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 52906367 ~ 52917437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612892.2
GCTTTTTTAAGTTTGAACCTTTTGCCCTTCCGTCATCATTTAACCACGTGGGccgaaaaaaatacatatataaaagGTAGAAGAAGCCATTGTTCGCGTTATAAAGAAGTAGCTAGCGAACATGGCATCAACAAGCCGTGGAGACGGCCTGGCCCTTCCTAAGGTGCAGTGCCCCAACCACCCAGACGCCATGCTGGTGGAAGACTACAGAGCAGGGGATATGATCTGCCCCGAGTGTGGCCTTGTAGTGGGTGACAGGGTGATTGACGTCGGCTCAGAGTGGAGGACCTTCACCAATGAGAAAGCCACCAAAGACCCGTCTAGAGTGGGCGACGCCCAGAACCCACTCCTCAACGGGGGAGACTTGACCACCATGATCAGCAAGGGAACAGGGGCGGCTAGTTTTGACGAGTTCGGCAACTCCAAGTACCAGAACCGGCGGACCATGAGCAGTTCAGACCGTGCCATGCTAAACGCCTTCAAAGAGATTACCACCATGGCCGACCGGATCAACCTACCAAGGAATATCATAGACCGAACAAATAACTTATTTAAGCAAGTGTACGAACAGAAGAGCCTGAAGGGGCGGGCCAACGACGCCATCGCATCAGCCTGCCTTTACATCGCCTGCAGACAAGAGGGCGTGCCTCGGACGTTTAAAGAGATCTGCGCCGTGTCCCGCATCTCCAAGAAGGAGATCGGCCGCTGCTTCAAGCTGATCCTCAAGGCCCTGGAGACCAGCGTGGACCTCATCACCACCGGAGACTTCATGTCCCGCTTCTGCTCCAACCTGGGCCTGCCGAAGCAGGTGCAGATGGCGGCCACCTACATCGCCCGGAAGGCCGTGGAGCAGGACCTGGTGCCCGGCAGGAGCCCCATCTCTGTGGCCGCCGCCGCCATCTACATGGCCTCCCAGGCCTCCGCTGAGAAGAAGACCCAGAAAGAGATTGGAGACATCGCCGGTGTGGCAGACGTCACAATCAGACAGTCGTACCGACTCATCTACCCCCGTGCAGCTGACCTCTTCCCCCCGGACTTCAAATTCGACACCCCTGTGGACAAACTGCCCCAGCTGTGAAGACCCACTCGCCCCGATGACACTTTAAAGGTTATTTTTCTAGTTTTTAATCTATTAGCAATTTTTTTCCCCTTTGTTAATTAACTTAAGACTTCAGGCCATTGTGAAGGCACTTTTTGCAGGAATACAGACAAGTACAGGACACACATtccaatacttaaaaaaaaaagagattgcAAACTGTACTTACAGTATTTCATTtgagtgtatatatactgtatatatgtccaAGTGGGAAAATGTAATTGGTGCTTGCAATATTAGGCTGGTttcatactatatacattttcttTTGTAGGAAATGCAGGTTCTATTTTGTTAGCTTGTATTAAGTAAATCAAATGCTTTTCTGAAAAGCGTGTTGAAAACCTCATGCATTGATTAACATTAAACTTTGTTTACAGAATTGAGA

Function

NR:

description
transcription initiation factor IIB isoform X1

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006413 translational initiation biological_process
GO:0017025 TBP-class protein binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03124 TFIIB, GTF2B, SUA7, tfb; transcription initiation factor TFIIB

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612892.2 True 1490 mRNA 0.50 7 52906367 52917437
Loading

Neighbor

gene id symbol gene type direction distance location
selenof sep15 coding downstream 87660 52793317 ~ 52818726 (-)
LOC110530084 LOC106568816 coding downstream 149765 52733010 ~ 52756602 (-)
trnav-cac-85 NA coding downstream 176397 52729898 ~ 52729970 (-)
trnav-cac-84 NA coding downstream 179337 52726958 ~ 52727030 (-)
trnav-cac-83 NA coding downstream 180922 52725373 ~ 52725445 (-)
LOC110530094 LOC106568986 coding upstream 31564 52949001 ~ 52967823 (-)
LOC110530097 NA coding upstream 82162 52999599 ~ 53001669 (-)
LOC110530096 LOC106569026 coding upstream 97741 53015178 ~ 53018104 (-)
LOC110529119 LOC106569026 coding upstream 102069 53019506 ~ 53022146 (-)
dipk1aa LOC106568980 coding upstream 142209 53059646 ~ 53067786 (-)
G721289 NA non-coding downstream 126894 52779036 ~ 52779473 (-)
G721288 NA non-coding downstream 127771 52778378 ~ 52778596 (-)
G721260 NA non-coding downstream 179583 52719286 ~ 52726784 (-)
G721238 NA non-coding downstream 249778 52589219 ~ 52656589 (-)
G721414 NA non-coding upstream 57360 52974797 ~ 52977530 (-)
G721425 LOC106568985 non-coding upstream 69480 52986917 ~ 52989556 (-)
G721435 LOC106568983 non-coding upstream 91252 53008689 ~ 53010120 (-)
G721407 NA non-coding upstream 97181 53014618 ~ 53100336 (-)
G721509 NA non-coding upstream 206937 53124374 ~ 53124686 (-)
G721275 NA other downstream 144916 52761039 ~ 52761451 (-)
LOC110530043 LOC106568739 other downstream 1647348 51252355 ~ 51259061 (-)
G719151 NA other downstream 1966896 50936928 ~ 50939471 (-)
LOC110530011 LOC106568709 other downstream 3017115 49866272 ~ 49937001 (-)
G718489 NA other downstream 3068671 49785674 ~ 49837696 (-)
LOC110529122 LOC106568971 other upstream 545745 53462034 ~ 53478913 (-)
G722459 NA other upstream 580711 53495804 ~ 53499730 (-)
G722602 NA other upstream 886006 53803443 ~ 53856065 (-)
G722670 NA other upstream 1008791 53926228 ~ 53927959 (-)
G722761 NA other upstream 1206942 54124379 ~ 54139341 (-)

Expression

LOC110530090(LOC106568989) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110530090(LOC106568989) Expression in each Bioproject

Bar chart with 21 bars.
LOC110530090(LOC106568989) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network