LOC110530097


Basic Information

Item Value
gene id LOC110530097
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 52999599 ~ 53001669 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052899.1
TGCCGATTGGATATCGCTAGagcgtgcttggctctgccctcctccttgcttgttctagtatgcccactatgactcatttgttcccGTTGGAATCGAcaagctgtggtctatcttggtttagttatacaaATATTTGGTTTTGTGCTAATTTTTACAATAAACCGACAGCAAGCATCAGAGTCAACGCAGCAAAAACACATGCGATTTATTCAGTCTCAGATTATTGAAATCAAGCCATCCAGCATGACAACTATACGATTGAGGATTACGAAAAAggatgcctgatgaagacctaagggtcAAAACGTTGTTAtaaataaatatcacctgggagcatgagAAGCAGTGTGCAgcgttttcctttctgttttccagGTTTTGCGTATTGTCATAGATTAGGAAAATAAGGTTTGCAGTCCCAATGAGCTGCTGGTTGGCTTGCTTGAGCAGGTGGAGAAGACCCTGACTCCGTCGCCGAGACAAGTCTTCCTCCTGCTGCAGCCCACTACAGAAAGCTGGGCAGCCCGGAAGGCCTCCTCGGTGGGCGTGGCTCTCGCCACCCTGCTGGGCCAGGTGGCCAGGCTGCCTGTGCCCCAGACCAAGGAACAGGAGGAAGACGACATGTTCGGCCCGTGCAGCTGCTGGTCGGCCCTCCTGGTCTTCTTCAGACCCTTTACGGGAGGCCGGGCCGAGCCGGCAGGCCGGTATTACCAACAGGACGCCCACGGTCAAAGAGGATGAGCTGAGGACAGAGacgcgttctatctcctagagattaatgtactttggtgtgaaaactACAActcaatcgcagaacaacagcgaaggaccttg

Function

NR:

description
PREDICTED: glomulin isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052899.1 True 834 mRNA 0.50 4 52999599 53001669
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110530094 LOC106568986 coding downstream 31776 52949001 ~ 52967823 (-)
LOC110530090 LOC106568989 coding downstream 82162 52906367 ~ 52917437 (-)
selenof sep15 coding downstream 180892 52793317 ~ 52818726 (-)
LOC110530084 LOC106568816 coding downstream 242997 52733010 ~ 52756602 (-)
trnav-cac-85 NA coding downstream 269629 52729898 ~ 52729970 (-)
LOC110530096 LOC106569026 coding upstream 13509 53015178 ~ 53018104 (-)
LOC110529119 LOC106569026 coding upstream 17837 53019506 ~ 53022146 (-)
dipk1aa LOC106568980 coding upstream 57977 53059646 ~ 53067786 (-)
LOC110530106 LOC106568974 coding upstream 253528 53255197 ~ 53258515 (-)
nsun4 nsun4 coding upstream 340934 53342603 ~ 53360245 (-)
G721425 LOC106568985 non-coding downstream 10043 52986917 ~ 52989556 (-)
G721414 NA non-coding downstream 22069 52974797 ~ 52977530 (-)
G721289 NA non-coding downstream 220126 52779036 ~ 52779473 (-)
G721288 NA non-coding downstream 221003 52778378 ~ 52778596 (-)
G721435 LOC106568983 non-coding upstream 7020 53008689 ~ 53010120 (-)
G721407 NA non-coding upstream 12949 53014618 ~ 53100336 (-)
G721509 NA non-coding upstream 122705 53124374 ~ 53124686 (-)
G721464 LOC106568976 non-coding upstream 147824 53149493 ~ 53152132 (-)
G721515 NA non-coding upstream 151008 53152677 ~ 53152971 (-)
G721275 NA other downstream 238148 52761039 ~ 52761451 (-)
LOC110530043 LOC106568739 other downstream 1740580 51252355 ~ 51259061 (-)
G719151 NA other downstream 2060128 50936928 ~ 50939471 (-)
LOC110530011 LOC106568709 other downstream 3110347 49866272 ~ 49937001 (-)
G718489 NA other downstream 3161903 49785674 ~ 49837696 (-)
LOC110529122 LOC106568971 other upstream 461513 53462034 ~ 53478913 (-)
G722459 NA other upstream 496479 53495804 ~ 53499730 (-)
G722602 NA other upstream 801774 53803443 ~ 53856065 (-)
G722670 NA other upstream 924559 53926228 ~ 53927959 (-)
G722761 NA other upstream 1122710 54124379 ~ 54139341 (-)

Expression

LOC110530097 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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LOC110530097 Expression in each Bioproject

Bar chart with 13 bars.
LOC110530097 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network