LOC110529119 (LOC106569026)


Basic Information

Item Value
gene id LOC110529119
gene name LOC106569026
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53019506 ~ 53022146 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611261.2
TAAAATAGGCGATGTGGACGGAGAGGATGTCATCACAAGTGACCAGGGACCTTGAGAGTCACGCAGCGAATAGTAACCATGCCGAGGTCATTTTTGGTGAAGAGTAAACGGGCACATAGCTACCACCAACCCCGATACCTGGATGATGAGTACATACAACTGGATACTAATGTATCCCTTATATGCGCAGAGCGCAAACTGCAGGTTGAGGGGAGCTGTGACGCGCAGGATGCTCATAACCATGGCAAGCGCTCCCCCGAGTCCTATCTAATGCGCACGGCTGACCTGTTATCCACCTCCCCGCTGAGCCACGAGGGCAACGTGTGCGACCGCTTCCCGGACTATGACTACTACTGGCGCCCTCCATCTGCATCACAAGATTCGGAACCATGTTTCACTCCGTCAGTAGACAACGCTCAACCTTTCGCCATTCCATTCCGTCCTTATGTATGGACTACCTACTCTGGTTCCAAGCTCAGGCACCTTGTGCAGCGAACATACCAACAGAATCTCTCCACAACTCTGGAGCCTGACACACAGATGGGTATCGATGGATCCGAGGATGGTGCCTCCAACTCCCCCATTTACGCACAGCGGGGCCCGCACACAGGATTTTACCGGGACTTTGGGTCTACGGTGTTCCCTACCTATAAAATGTGGGACTCCGACCAATTATACTCGGACCTCAAGGTCTCTAAGATCAAGTCTGAATCCGATCTCATCTGTTCCCGTATAGAGCCAAGCAGATCGTACAAATGCATTAAGTGTTGCAAGGTCTTCTCGACACCGCACGGGTTGGAAGTTCACGTCCGTCGGTCGCACAGCGGAGCACGACCCTTCACCTGTGGAATGTGTTGGAAAACATTTGGGCACGCAGTGAGCTTGGAACAACATAAAGCCGTTCACTCACAGGAGAGGAGCTTCGACTGCAAAATCTGTTGCAAAAGCTTCAAGCGATCGTCCACGCTGTCCACGCACCTGCTCATCCACTCGGACACGCGCCCCTACCCCTGTCAGTACTGCGGTAAGAGATTCCATCAGAAGTCGGACATGAAGAAACACACCTTCATCCATACAGGTGAGAAACCGCACAAGTGCCAGGTATGCGGGAAGGCCTTCAGTCAGAGCTCCAACCTCATCACGCACAGCCGCAAGCACACGGGCTATAAACCCTTCTGCTGCGACCTCTGCGTCAAGGGATTCCAACGGAAAGTGGATCTGAGGAGGCACAAAGACACACAACATGGATTTAAATGAAAAACCGCGAACAGCAAAAATTGTGCTGGAGGATTGAGAAGAAAATAGGCTAATATGGAAGTAAATATGTCAAATTTCAGAGGAAGGATTAACGAATTAATTTGAATAGTATATGCAATTATGTCAatttcaaaatacatttatgcaatACTAGTTTTGTTATAGGCCAAATTGTCTTTAACATTTTACACAAAATACATGATTTAGAAGTGTTGGTTGTGATGCCCAACTAGGCATATTTATATTTGTGCTTAATCTTTTGTTTTTTTCCCTGGCAGAAGAAAACGATTAAATGCAATACTACTCAGCAATTTCATGCTTAGTAGGCTATTTGTgaaaatgtcacgttctgaccatagttcttttgtgttttccttgttttagtattggtcaggacgtgagctgggtgggcattctatgtttgtctatttctatg

Function

NR:

description
zinc finger protein Gfi-1-like

GO:

id name namespace
GO:0007422 peripheral nervous system development biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611261.2 True 1693 mRNA 0.47 6 53019506 53022146
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110530096 LOC106569026 coding downstream 1402 53015178 ~ 53018104 (-)
LOC110530097 NA coding downstream 17837 52999599 ~ 53001669 (-)
LOC110530094 LOC106568986 coding downstream 51683 52949001 ~ 52967823 (-)
LOC110530090 LOC106568989 coding downstream 102069 52906367 ~ 52917437 (-)
selenof sep15 coding downstream 200799 52793317 ~ 52818726 (-)
dipk1aa LOC106568980 coding upstream 37500 53059646 ~ 53067786 (-)
LOC110530106 LOC106568974 coding upstream 233051 53255197 ~ 53258515 (-)
nsun4 nsun4 coding upstream 320457 53342603 ~ 53360245 (-)
LOC110529122 LOC106568971 coding upstream 439888 53462034 ~ 53478913 (-)
LOC110530111 LOC106598945 coding upstream 478310 53500456 ~ 53585621 (-)
G721435 LOC106568983 non-coding downstream 9386 53008689 ~ 53010120 (-)
G721425 LOC106568985 non-coding downstream 29950 52986917 ~ 52989556 (-)
G721414 NA non-coding downstream 41976 52974797 ~ 52977530 (-)
G721289 NA non-coding downstream 240033 52779036 ~ 52779473 (-)
G721509 NA non-coding upstream 102228 53124374 ~ 53124686 (-)
G721464 LOC106568976 non-coding upstream 127347 53149493 ~ 53152132 (-)
G721515 NA non-coding upstream 130531 53152677 ~ 53152971 (-)
G721516 NA non-coding upstream 130977 53153123 ~ 53153362 (-)
G721472 NA non-coding upstream 161576 53183722 ~ 53184178 (-)
G721275 NA other downstream 258055 52761039 ~ 52761451 (-)
LOC110530043 LOC106568739 other downstream 1760487 51252355 ~ 51259061 (-)
G719151 NA other downstream 2080035 50936928 ~ 50939471 (-)
LOC110530011 LOC106568709 other downstream 3130254 49866272 ~ 49937001 (-)
G718489 NA other downstream 3181810 49785674 ~ 49837696 (-)
G722459 NA other upstream 476002 53495804 ~ 53499730 (-)
G722602 NA other upstream 781297 53803443 ~ 53856065 (-)
G722670 NA other upstream 904082 53926228 ~ 53927959 (-)
G722761 NA other upstream 1102233 54124379 ~ 54139341 (-)

Expression

LOC110529119(LOC106569026) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.75.
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LOC110529119(LOC106569026) Expression in each Bioproject

Bar chart with 16 bars.
LOC110529119(LOC106569026) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network