rpl5a (LOC106568981)


Basic Information

Item Value
gene id rpl5a
gene name LOC106568981
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53054537 ~ 53059566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985652.1
TACTTAATTTGAGGATTGAGGGAATGTGGTGTTTCTTTTAAAGTGTTTGGAATGCACTAAAGTCTGGGATTTCCCGAGACTACGACGAATAAAATAATATTCATACAATTTTCCTCCCATCCAGTAGGTGGCGTGCTTTACCATTTCTATTCATAGAAAGCGGTATCCTGTCTGCGACGTCAGCATTTTTGACCAACTCTGCAGCTACTTGGGAAGACTTTCAACTGTGAAGTTGGAAAATTTTCAAAAATGgGCTTTGTGAAAGTCGTTAAAAGTAAGGCCTACTTCAAGAGATACCAGGTGAAATTCAGGAGAAGGCGAGAGGGGAAGACTGACTACTTTGCCCGTAAGCGCCTGGTCATACAAGACAAGAACAAGTACAACACTCCCAAGTACAGGATGATCGTGAGGTTCTCCAACAGAGATATCTGCTGTCAGATTGCTTATGCCAAGATTGAGGGTGACCAGATTGTCAGTGCCGCCTACTCCCATGAACTGCCAAAGTACGGCATCACAGTGGGACTGACAAACTATGCTGCAGCCTACTGCACAGGCCTACTGCTGGCTCGCAGGCTGCTGAACAAGTTTGGTCTGGACCAGGTGTACGAGGGCCAAGTGGAGGTGACGGGAGATGAGTTCAACGTGGAGAGTATAGACGGCCAGCCGGGGGCCTTCACGTGTTTTCTAGACGCCGGGCTCGCCAGGACGTCGACGGGCAACAAAGTGTTCGGAGCACTAAAGGGCGCCGTCGACGGTGGCCTCTCAATTCCTCACAGCACAAAACGTTTCCCAGGCTATGACATGGAGAGCAAAGAGTTCAACGCAGAGATGCATCGCAAACACATCATGGGCATGAACGTGTCGGACTACATGAGCTACCTGATGGAGGAGGACGAAGACACCTACAAGAAACAGTTCTCCCGCTTCATAAAGAACGGCGTCACGCCAGACACAGTAGAGCAGATGTACAAGAAAGCACACGCCGCCATTAGAGAGAACCCAGTCCACGAAAAGAAACCCAAAAAAGACGTCAAGAAGAAGAGGTGGAACCGCGCCAAACTCTCATTGGCACAGAGAAAGGACCGCGTTGCCCAGAAAAAGGCCAGCTTTCTACGAGCACAGGAAGCAGAGGCGGCGGATGGTTAGACGGACCACTGGCTTAATAAATGTATTGCAAATGACTTTGTTTCACCGTCACTTTGCTCCCTGCGGAAGCACGGCTTCCTGTATACTGCAGTTTTTATATTTGAGGGAAATTCTGGTGTGATTGAATGAGTTGATTTAGCAGGTTCTCCCACACATTCCGTTTTTAACATCCTTTACGGACCTTTTTTAGTCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K02932 RP-L5e, RPL5; large subunit ribosomal protein L5e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985652.1 True 1340 mRNA 0.48 8 53054537 53059566

Neighbor

gene id symbol gene type direction distance location
rpap2 LOC106568983 coding upstream 39466 53001160 ~ 53015071 (+)
hfm1 LOC106568985 coding upstream 60148 52968196 ~ 52994389 (+)
LOC110530091 LOC106568987 coding upstream 114848 52933573 ~ 52939689 (+)
LOC110530089 LOC106568990 coding upstream 149947 52857292 ~ 52904590 (+)
LOC110530088 hs2st coding upstream 203430 52819122 ~ 52851107 (+)
mtf2 LOC106568979 coding downstream 10788 53070354 ~ 53080543 (+)
ccdc18 LOC106568977 coding downstream 29147 53088713 ~ 53121268 (+)
scinlb LOC106568976 coding downstream 62742 53122308 ~ 53152141 (+)
wls LOC106568975 coding downstream 94315 53153881 ~ 53181479 (+)
gng12a gbg12 coding downstream 131539 53191105 ~ 53251843 (+)
G720829 NA non-coding upstream 201244 52838834 ~ 52853293 (+)
G720803 NA non-coding upstream 273236 52781097 ~ 52781301 (+)
G720802 NA non-coding upstream 275192 52779047 ~ 52779345 (+)
G720795 NA non-coding upstream 283365 52770945 ~ 52771172 (+)
G720792 NA non-coding upstream 286078 52768145 ~ 52768459 (+)
G720979 NA non-coding downstream 68507 53128073 ~ 53128294 (+)
G721056 NA non-coding downstream 223539 53283105 ~ 53283355 (+)
G721613 NA non-coding downstream 258537 53318103 ~ 53318320 (+)
LOC110530024 LOC106568723 other upstream 2413371 50607401 ~ 50641183 (+)
LOC110530019 LOC106568718 other upstream 2660701 50384296 ~ 50397007 (+)
LOC118965615 NA other upstream 3200345 49853027 ~ 49854435 (+)
G716993 LOC100136012 other upstream 3507452 49546212 ~ 49547085 (+)
G716862 NA other upstream 3720765 49332841 ~ 49333772 (+)
G721689 LOC106583873 other downstream 317666 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 610830 53670348 ~ 53674103 (+)
rps28 NA other downstream 866651 53926018 ~ 53927959 (+)
LOC118965528 LOC106568937 other downstream 1564608 54557953 ~ 54670115 (+)
LOC110530153 LOC106568927 other downstream 2074464 55120291 ~ 55136638 (+)

Expression


Co-expression Network