scinlb (LOC106568976)


Basic Information

Item Value
gene id scinlb
gene name LOC106568976
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53122308 ~ 53152141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985653.1
agctgtggtatatggccaatatactacgtctaagggctgttcttaggcaggATGCAATTTGACATGAGAATGTGCTCGCCTCCCTGTAAAATTTAGACCGTGCATATACACATCTGCTGGTGGTGTTGTCTGCTACTGCAAGCTGGCAAagCCATCATGGTGTCCCACAAGGAATTTGTGGCCGCTGGGAAGGAGACAGGGCTGCAGGTGTGGCGTATTGAGAACATGGACCTGAGGCCAGTCCCCAAGGCTCTACACGGCAACTTTTTCACAGGAGACGCGtacatcctcctctacaccaCCGCAGCCCCCTCCCACTACATACACATGTGGatggGTGATGAGTGTTCTCAGGATGAGAGCGGAGCGGCTGCCATCTTTGCCACGCAGCTGGATGACTTCCTGGGTGGAGGGCCGGTCCAGTTCAGAGAGGTCCAGAACAATGAGTCCATCACCTTCATGGGCTACTTCAAGTCTGGCATCAAGTACAAGCAAGGGGGTGTGGCCTCAGGCTTCCAACACGTCGTGACCAATGACATGAGCGTGAAGCGCCTGTTGCACATCAAGGGGAGGCGGGCCATCCGAGCCACAGAGGTGGCCCTGTCCTGGGCTAGCTTCAACCAGGGAGACTGCTTTATCGTGGACCTGGGAAAGGATATCTACCAGTGGTGTGGCAGTGAGTGTAACCGTTTTGAGCGTCTGAAGGCCTCCCAGGTGGCCATTGACATCAGGGACAACGAGAGGAACGGCAGGGCCAAACTCCACATGGTGGAGGATGGGGCTGAGCCACAGGCACTTACTGAGGCTCTGGGGCCCAAACCCAGTATCCCCCCTGGCACACCCGATGATGAGAAGGTGGACACCTCCAACAGGAAGAAGGGTGCCCTCTACATGATCTCCGATGCCTCTGGCTCTATGAAGTCGTCGTCGGTGGCCTCCTCCAGCCCCTTCAAACAGGCCATGCTGACCGCTGAGGAGTGCTACATCCTGGACAACGGAGTGGACAAGAACGTCTTCGTATGGAAAGGACCCAAGGCCAACACATCAGAACGTAAAGCAGCCATGTCTGCAGCGCAGAAGTTCATCAAAGAGAAGGGCTACTCCGATAAGACACAGATCCAGGTACTTCCAGCAGGAGGCGAGACCACTCTTTTCAAGCAGTTCTTCAGTGACTGGAAGGACAAGGACCAGACCACAGGTCCCAGTAAGGCCTACAGCATAGGCCGCATTGCCAAGGTGGAGCAAGTGCCCTTCGACGCCTCCACCCTCCACTCCAACAAAAACATGGCCGCCCAGCATGGCATGGTGGATGATGGTAAAGGCAAAGTCCAGATCTGGCGTGTTGAGGATGGTGATAAAGTGGCTGTGGATCCCTCCTCCTATGGCCAGTTCTATGGAGGAGACTGTTACCTCAtcctctacagctacagactggGAGGCAGGGAGCAGCACATCATCTACACCTGgcaGGGGCTGAAGTGCACCCAGGATGAGCTGGCTGCCTCTGCCTTCATGACAGTGAAGCTGGATGACTCTATGGGAGGAGCCCCTGTTCAGGTGCGTGTGACCCAGGGCCAGGAACCCCCCCACCTGATGAGCCTGTTCCAGGGCAAGCCAATGATGGTCCACATTGGAGGAACGTCCCGTAAAGGAGGACAGACGGGCACTGGCAGCACACGACTCTTCCACATTCGGCAGTCCTCCACCCGCGCTACACGAGCTGTAGAGGTAGAGCCCTCCGCTTCCTTCCTGAATGCCAATGACGTGTTTGTGCTCAAATCTCCCGATGCCATGTTTGTGTGGAGGGGGGTGGGCGCCAGCGAGGAGGAAATGGCCGCCGCCAAGCATGTGGTGGGCATCCTGGGTGGCAGTGCCAGTGATGTGTCTGAGGGCAAGGAGCCAGCTGGGTTCTGGTCTGCCCTTGGAGGAAAGAAGGAGTACCAGACCTCCAAGGGTCTGCAGAACATGGTCAAACCTCCACGCCTGTTTGGCTGCTCCAACAAGACCGGATGCCTCAGTGTGGAAGAGGTTCCTGGAGACTTCCAACAGTCTGACCTGGCCACTGATGATGTCATGTTGCTGGACACCTGGGACCAGATCTTCCTCTGGATCGGTAACGATGCGAATGCGGAAGAGAGGTCTGGAGCACCCAAAATAGctaAGGACTATGTGGACTCAGACCCCTCTGGACGCAGAGGGCTGCCCATCTCCACCATCAAACAGGGGGCAGAACCCCCAACCTTCACTGGCTGGTTCCAGGCTTGGGACCCCAAAATGTGGGAAACAGACCCTCTGGAGAGAATCCGTGCAGCGTTCTAAATGCATAACTCCACCCACCCCCTTACCTATCTGCCACTTGCCCATACCCATTCCCTTGCCACTCCCATGCACTGCTGTTTGGGAGTTTCTGCCTCTATTCTGTACCAGTGCATTGCACCGCTCTGTTACTTTAGCTTGAAAAAAATGACATAATGTTGTCGTTTTTAAAGATGTATGAAATGTCTGCCTAGCATGTTTTTACATTTCCTGTTAGAGCATATATTTGGGAGCCTTCTCACTCCAGTAGGCCTAGTGTTTTGAATCCAAAAGGTATTTTTTGCACTTTGTCTTGATATGTGATGCATGCTGCATTTAACAAGATAAACTTCatggtcaaaagtatgtggacctgctcatcgaacatctcattccaaaatcatggacattaatatggagttggtccatgtttgtctatggagattgtgtgCTCGTTTTGATACATCCGATTTGATACATCCGTCAGCAATAGGTGTGGCtgaaatccactcatttgaacggtgtccacatacttttgtatatgtagtgtatctaACTGAAGAAATACATGATATCTTTTTTACATAATTTTTTTATTATTCTGAAATGCTATTACAGATGGCTTTTAAATAAATTCCTAGTATTTTAAA
>XM_021612921.2
gGTGCTCCCATAAACGGCTAAACCCTCCCACAAGCAATTAACAAGGCTCTTTGCCTCTGGAAGAGAAGTCGCATACGCGTCCACATCTGCTCGCTCAACACACATTCTCGTACCCTCCGTTTTACATCTGTCAAGCGagCCATCATGGTGTCCCACAAGGAATTTGTGGCCGCTGGGAAGGAGACAGGGCTGCAGGTGTGGCGTATTGAGAACATGGACCTGAGGCCAGTCCCCAAGGCTCTACACGGCAACTTTTTCACAGGAGACGCGtacatcctcctctacaccaCCGCAGCCCCCTCCCACTACATACACATGTGGatggGTGATGAGTGTTCTCAGGATGAGAGCGGAGCGGCTGCCATCTTTGCCACGCAGCTGGATGACTTCCTGGGTGGAGGGCCGGTCCAGTTCAGAGAGGTCCAGAACAATGAGTCCATCACCTTCATGGGCTACTTCAAGTCTGGCATCAAGTACAAGCAAGGGGGTGTGGCCTCAGGCTTCCAACACGTCGTGACCAATGACATGAGCGTGAAGCGCCTGTTGCACATCAAGGGGAGGCGGGCCATCCGAGCCACAGAGGTGGCCCTGTCCTGGGCTAGCTTCAACCAGGGAGACTGCTTTATCGTGGACCTGGGAAAGGATATCTACCAGTGGTGTGGCAGTGAGTGTAACCGTTTTGAGCGTCTGAAGGCCTCCCAGGTGGCCATTGACATCAGGGACAACGAGAGGAACGGCAGGGCCAAACTCCACATGGTGGAGGATGGGGCTGAGCCACAGGCACTTACTGAGGCTCTGGGGCCCAAACCCAGTATCCCCCCTGGCACACCCGATGATGAGAAGGTGGACACCTCCAACAGGAAGAAGGGTGCCCTCTACATGATCTCCGATGCCTCTGGCTCTATGAAGTCGTCGTCGGTGGCCTCCTCCAGCCCCTTCAAACAGGCCATGCTGACCGCTGAGGAGTGCTACATCCTGGACAACGGAGTGGACAAGAACGTCTTCGTATGGAAAGGACCCAAGGCCAACACATCAGAACGTAAAGCAGCCATGTCTGCAGCGCAGAAGTTCATCAAAGAGAAGGGCTACTCCGATAAGACACAGATCCAGGTACTTCCAGCAGGAGGCGAGACCACTCTTTTCAAGCAGTTCTTCAGTGACTGGAAGGACAAGGACCAGACCACAGGTCCCAGTAAGGCCTACAGCATAGGCCGCATTGCCAAGGTGGAGCAAGTGCCCTTCGACGCCTCCACCCTCCACTCCAACAAAAACATGGCCGCCCAGCATGGCATGGTGGATGATGGTAAAGGCAAAGTCCAGATCTGGCGTGTTGAGGATGGTGATAAAGTGGCTGTGGATCCCTCCTCCTATGGCCAGTTCTATGGAGGAGACTGTTACCTCAtcctctacagctacagactggGAGGCAGGGAGCAGCACATCATCTACACCTGgcaGGGGCTGAAGTGCACCCAGGATGAGCTGGCTGCCTCTGCCTTCATGACAGTGAAGCTGGATGACTCTATGGGAGGAGCCCCTGTTCAGGTGCGTGTGACCCAGGGCCAGGAACCCCCCCACCTGATGAGCCTGTTCCAGGGCAAGCCAATGATGGTCCACATTGGAGGAACGTCCCGTAAAGGAGGACAGACGGGCACTGGCAGCACACGACTCTTCCACATTCGGCAGTCCTCCACCCGCGCTACACGAGCTGTAGAGGTAGAGCCCTCCGCTTCCTTCCTGAATGCCAATGACGTGTTTGTGCTCAAATCTCCCGATGCCATGTTTGTGTGGAGGGGGGTGGGCGCCAGCGAGGAGGAAATGGCCGCCGCCAAGCATGTGGTGGGCATCCTGGGTGGCAGTGCCAGTGATGTGTCTGAGGGCAAGGAGCCAGCTGGGTTCTGGTCTGCCCTTGGAGGAAAGAAGGAGTACCAGACCTCCAAGGGTCTGCAGAACATGGTCAAACCTCCACGCCTGTTTGGCTGCTCCAACAAGACCGGATGCCTCAGTGTGGAAGAGGTTCCTGGAGACTTCCAACAGTCTGACCTGGCCACTGATGATGTCATGTTGCTGGACACCTGGGACCAGATCTTCCTCTGGATCGGTAACGATGCGAATGCGGAAGAGAGGTCTGGAGCACCCAAAATAGctaAGGACTATGTGGACTCAGACCCCTCTGGACGCAGAGGGCTGCCCATCTCCACCATCAAACAGGGGGCAGAACCCCCAACCTTCACTGGCTGGTTCCAGGCTTGGGACCCCAAAATGTGGGAAACAGACCCTCTGGAGAGAATCCGTGCAGCGTTCTAAATGCATAACTCCACCCACCCCCTTACCTATCTGCCACTTGCCCATACCCATTCCCTTGCCACTCCCATGCACTGCTGTTTGGGAGTTTCTGCCTCTATTCTGTACCAGTGCATTGCACCGCTCTGTTACTTTAGCTTGAAAAAAATGACATAATGTTGTCGTTTTTAAAGATGTATGAAATGTCTGCCTAGCATGTTTTTACATTTCCTGTTAGAGCATATATTTGGGAGCCTTCTCACTCCAGTAGGCCTAGTGTTTTGAATCCAAAAGGTATTTTTTGCACTTTGTCTTGATATGTGATGCATGCTGCATTTAACAAGATAAACTTCatggtcaaaagtatgtggacctgctcatcgaacatctcattccaaaatcatggacattaatatggagttggtccatgtttgtctatggagattgtgtgCTCGTTTTGATACATCCGATTTGATACATCCGTCAGCAATAGGTGTGGCtgaaatccactcatttgaacggtgtccacatacttttgtatatgtagtgtatctaACTGAAGAAATACATGATATCTTTTTTACATAATTTTTTTATTATTCTGAAATGCTATTACAGATGGCTTTTAAATAAATTCCTAGTATTTTAAA

Function

NR:

description
gelsolin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985653.1 False 2945 mRNA 0.52 17 53122308 53152141
XM_021612921.2 True 2933 mRNA 0.53 17 53130604 53152141

Neighbor

gene id symbol gene type direction distance location
ccdc18 LOC106568977 coding upstream 1040 53088713 ~ 53121268 (+)
mtf2 LOC106568979 coding upstream 41765 53070354 ~ 53080543 (+)
rpl5a LOC106568981 coding upstream 62742 53054537 ~ 53059566 (+)
LOC118965683 NA coding upstream 64076 53058109 ~ 53058232 (+)
rpap2 LOC106568983 coding upstream 107237 53001160 ~ 53015071 (+)
wls LOC106568975 coding downstream 1740 53153881 ~ 53181479 (+)
gng12a gbg12 coding downstream 38964 53191105 ~ 53251843 (+)
LOC118965525 NA coding downstream 106299 53258440 ~ 53280342 (+)
LOC110530108 LOC106568973 coding downstream 173447 53325588 ~ 53336053 (+)
LOC110530110 LOC106569025 coding downstream 300007 53452148 ~ 53455033 (+)
G720829 NA non-coding upstream 269015 52838834 ~ 52853293 (+)
G720803 NA non-coding upstream 341007 52781097 ~ 52781301 (+)
G720802 NA non-coding upstream 342963 52779047 ~ 52779345 (+)
G720795 NA non-coding upstream 351136 52770945 ~ 52771172 (+)
G721056 NA non-coding downstream 130964 53283105 ~ 53283355 (+)
G721613 NA non-coding downstream 165962 53318103 ~ 53318320 (+)
G721635 NA non-coding downstream 184119 53336260 ~ 53336461 (+)
G721639 NA non-coding downstream 190136 53342277 ~ 53342488 (+)
LOC110530024 LOC106568723 other upstream 2481142 50607401 ~ 50641183 (+)
LOC110530019 LOC106568718 other upstream 2728472 50384296 ~ 50397007 (+)
LOC118965615 NA other upstream 3268116 49853027 ~ 49854435 (+)
G716993 LOC100136012 other upstream 3575223 49546212 ~ 49547085 (+)
G716862 NA other upstream 3788536 49332841 ~ 49333772 (+)
G721689 LOC106583873 other downstream 225091 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 518255 53670348 ~ 53674103 (+)
rps28 NA other downstream 774076 53926018 ~ 53927959 (+)
LOC118965528 LOC106568937 other downstream 1472033 54557953 ~ 54670115 (+)
LOC110530153 LOC106568927 other downstream 1981889 55120291 ~ 55136638 (+)

Expression


Co-expression Network