LOC110530106 (LOC106568974)


Basic Information

Item Value
gene id LOC110530106
gene name LOC106568974
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53255197 ~ 53258515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985655.1
TGCCAGTGCAACTTGCAAATGGCTCTCTTTTCACTTGAACTTGGCAAGCAATGCAATgcattaacatttaaaaaataatgctGAAAACGTCAGTGTATTGTTATTCAGATATTTAACTTCTGTAATGTTGTCTAAGTCATTTGACAACGTTGCTATGACTTGGTTAGTTGGCTTGGTTGAAGTATTTGCAGTATTCGAATATGTAACGCCAGCTTTTCTGTTGAGCTCACGAGACGCGTTCCGGCCAGCCAATCTGCAGTTAGCCTAACACTGTAACGCCGGTGTCAGGATGGATACAGTGGCAAAAGCATTGGAAGAGGTTCTCTCATTGGCATTACCCCAAGGATGCATTACAGTAGGGGTCTATGAAGCAGCAAAATCATTGAATGTAGATCCAGATAATGTGGTTCTGTGCATCCTGGCAACAGATGACGAGGATGTAAAGGACGTGGCCCTTCAGATCCACTTCACCCTGATCCAGGCATTCTGCTGTGAGAATGACATCAGCATCCTGCGAGTTAACAACACCAGGCGTCTGGCAGAGATCCTCGGCGGAGGGACACAGGGGGGAGAGCCCATGGATCTGCACTGTGTCCTGGTCACTAGCCCACACTCCTCCTCCTGGAAAGACCCAGCCCTGAGCAAAGTTAACCGCTTCTGCAGGGAGAGCCGGTGTATGGACCAGTGGGTACCCATCATTAACCTCCCTGAGCGATGAAGGGTCCCCCCAACAGCAAGACATGTGAAGGACTCTCTCTGTACGGGAGTAGAGTGATCCCTGATGGACACACTACCCTGGGAAAATTCCTGATGTAGGAAAAAGAAGACAAACAACCACAAAATAAAGCATtttgagaagaaaaaaagaagATCAGATCCAGCCATCTAGATGGGATACAAAAGGGGGTGGATTTCCACCGGGTCTGGTGGAGTTGAACTATCAGCTATGGCAGTCAGGGCGAGATGACGAGGCACTTTTTATGTTCAGTCACCAGACCGAAACCGACGTCTGTGCTTTTTAACGGAAGATGGACACACTGTACAGAAAGATAAAATCATGTATGGCAGAGCACTTCACCTTGTGGGGACTTAAAAGATTGAGAGAAACAAAAAGATGAGCTCTTTTGTAGCCACTGTTGTTAAGACAACCAAGGCCTCTCTTTTTGCCGAAACAGAGCACTTGTAGAAACACTGGACTTGTTGTATTTTTGTATTCACAATGTTGATGTTGTCTTTACTATTGTTATATAATTATTTAAAAAGGGAAGGGCTAAATATCCAATGAACAGTGAAGATACTATGCATTCAGTCAGTGTTTCCATTGCCAACAGTTTTTTACACAAGTGAATAGTTCTTTTTTTACAGTTAAGTTATTTCTTAtgatatttaaatgtatttatgtttacaATTTTTATACCATTATCTCTCTGCAATTGTCTGTAAAGACACAGGTATATTATTGTTGTCAATAAAAAGTATTTTTGGAGCCAGAA
>XM_021612923.2
GACGTTATCCTATGCACTTGCATTGTTCTTGCGATATTATCTGTGGACACCGGTTGTTGTCTCATTTCCAACAGCGATAAACAGAGTAGCTACTGTGTCACAACTTCACTAGCACTAACAGTGACATATCAGCAAGCAATATTATTGTCTCGATTTTGATTTCATGTGCAAAATGACATTTGAGGAACTAAGTGGGGATTATTCTGCAGAAAGGATGGATACAGTGGCAAAAGCATTGGAAGAGGTTCTCTCATTGGCATTACCCCAAGGATGCATTACAGTAGGGGTCTATGAAGCAGCAAAATCATTGAATGTAGATCCAGATAATGTGGTTCTGTGCATCCTGGCAACAGATGACGAGGATGTAAAGGACGTGGCCCTTCAGATCCACTTCACCCTGATCCAGGCATTCTGCTGTGAGAATGACATCAGCATCCTGCGAGTTAACAACACCAGGCGTCTGGCAGAGATCCTCGGCGGAGGGACACAGGGGGGAGAGCCCATGGATCTGCACTGTGTCCTGGTCACTAGCCCACACTCCTCCTCCTGGAAAGACCCAGCCCTGAGCAAAGTTAACCGCTTCTGCAGGGAGAGCCGGTGTATGGACCAGTGGGTACCCATCATTAACCTCCCTGAGCGATGAAGGGTCCCCCCAACAGCAAGACATGTGAAGGACTCTCTCTGTACGGGAGTAGAGTGATCCCTGATGGACACACTACCCTGGGAAAATTCCTGATGTAGGAAAAAGAAGACAAACAACCACAAAATAAAGCATtttgagaagaaaaaaagaagATCAGATCCAGCCATCTAGATGGGATACAAAAGGGGGTGGATTTCCACCGGGTCTGGTGGAGTTGAACTATCAGCTATGGCAGTCAGGGCGAGATGACGAGGCACTTTTTATGTTCAGTCACCAGACCGAAACCGACGTCTGTGCTTTTTAACGGAAGATGGACACACTGTACAGAAAGATAAAATCATGTATGGCAGAGCACTTCACCTTGTGGGGACTTAAAAGATTGAGAGAAACAAAAAGATGAGCTCTTTTGTAGCCACTGTTGTTAAGACAACCAAGGCCTCTCTTTTTGCCGAAACAGAGCACTTGTAGAAACACTGGACTTGTTGTATTTTTGTATTCACAATGTTGATGTTGTCTTTACTATTGTTATATAATTATTTAAAAAGGGAAGGGCTAAATATCCAATGAACAGTGAAGATACTATGCATTCAGTCAGTGTTTCCATTGCCAACAGTTTTTTACACAAGTGAATAGTTCTTTTTTTACAGTTAAGTTATTTCTTAtgatatttaaatgtatttatgtttacaATTTTTATACCATTATCTCTCTGCAATTGTCTGTAAAGACACAGGTATATTATTGTTGTCAATAAAAAGTATTTTTGGAGCCAGAA
>XM_036985654.1
AGCAGCAGTTTTGCACGCTCTGCCGACTGTCCAATCAGAAACTGGTAGCGTCTCGTTGCTCTGTCTCCATACCCGGCTCTTTCTCATAACAGGATGGATACAGTGGCAAAAGCATTGGAAGAGGTTCTCTCATTGGCATTACCCCAAGGATGCATTACAGTAGGGGTCTATGAAGCAGCAAAATCATTGAATGTAGATCCAGATAATGTGGTTCTGTGCATCCTGGCAACAGATGACGAGGATGTAAAGGACGTGGCCCTTCAGATCCACTTCACCCTGATCCAGGCATTCTGCTGTGAGAATGACATCAGCATCCTGCGAGTTAACAACACCAGGCGTCTGGCAGAGATCCTCGGCGGAGGGACACAGGGGGGAGAGCCCATGGATCTGCACTGTGTCCTGGTCACTAGCCCACACTCCTCCTCCTGGAAAGACCCAGCCCTGAGCAAAGTTAACCGCTTCTGCAGGGAGAGCCGGTGTATGGACCAGTGGGTACCCATCATTAACCTCCCTGAGCGATGAAGGGTCCCCCCAACAGCAAGACATGTGAAGGACTCTCTCTGTACGGGAGTAGAGTGATCCCTGATGGACACACTACCCTGGGAAAATTCCTGATGTAGGAAAAAGAAGACAAACAACCACAAAATAAAGCATtttgagaagaaaaaaagaagATCAGATCCAGCCATCTAGATGGGATACAAAAGGGGGTGGATTTCCACCGGGTCTGGTGGAGTTGAACTATCAGCTATGGCAGTCAGGGCGAGATGACGAGGCACTTTTTATGTTCAGTCACCAGACCGAAACCGACGTCTGTGCTTTTTAACGGAAGATGGACACACTGTACAGAAAGATAAAATCATGTATGGCAGAGCACTTCACCTTGTGGGGACTTAAAAGATTGAGAGAAACAAAAAGATGAGCTCTTTTGTAGCCACTGTTGTTAAGACAACCAAGGCCTCTCTTTTTGCCGAAACAGAGCACTTGTAGAAACACTGGACTTGTTGTATTTTTGTATTCACAATGTTGATGTTGTCTTTACTATTGTTATATAATTATTTAAAAAGGGAAGGGCTAAATATCCAATGAACAGTGAAGATACTATGCATTCAGTCAGTGTTTCCATTGCCAACAGTTTTTTACACAAGTGAATAGTTCTTTTTTTACAGTTAAGTTATTTCTTAtgatatttaaatgtatttatgtttacaATTTTTATACCATTATCTCTCTGCAATTGTCTGTAAAGACACAGGTATATTATTGTTGTCAATAAAAAGTATTTTTGGAGCCAGAA

Function

NR:

description
growth arrest and DNA damage-inducible protein GADD45 alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985655.1 False 1493 mRNA 0.43 4 53255197 53257589
XM_021612923.2 False 1418 mRNA 0.43 4 53255197 53257830
XM_036985654.1 True 1297 mRNA 0.44 4 53255197 53258515
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Neighbor

gene id symbol gene type direction distance location
dipk1aa LOC106568980 coding downstream 187411 53059646 ~ 53067786 (-)
LOC110529119 LOC106569026 coding downstream 233051 53019506 ~ 53022146 (-)
LOC110530096 LOC106569026 coding downstream 237093 53015178 ~ 53018104 (-)
LOC110530097 NA coding downstream 253528 52999599 ~ 53001669 (-)
LOC110530094 LOC106568986 coding downstream 287374 52949001 ~ 52967823 (-)
nsun4 nsun4 coding upstream 84088 53342603 ~ 53360245 (-)
LOC110529122 LOC106568971 coding upstream 203519 53462034 ~ 53478913 (-)
LOC110530111 LOC106598945 coding upstream 241941 53500456 ~ 53585621 (-)
LOC118965526 NA coding upstream 269088 53527596 ~ 53533919 (-)
LOC110530113 LOC106598949 coding upstream 341120 53599635 ~ 53635592 (-)
G721526 NA non-coding downstream 66382 53188582 ~ 53188815 (-)
G721525 NA non-coding downstream 68190 53186667 ~ 53187007 (-)
G721472 NA non-coding downstream 71019 53183722 ~ 53184178 (-)
G721516 NA non-coding downstream 101835 53153123 ~ 53153362 (-)
G721515 NA non-coding downstream 102226 53152677 ~ 53152971 (-)
G721599 NA non-coding upstream 37594 53296109 ~ 53296328 (-)
G721631 LOC102314236 non-coding upstream 71950 53330465 ~ 53330996 (-)
G721638 NA non-coding upstream 82226 53340741 ~ 53340962 (-)
G721685 LOC106594194 non-coding upstream 117515 53376030 ~ 53376247 (-)
G721704 NA non-coding upstream 128960 53387475 ~ 53387680 (-)
G721275 NA other downstream 493746 52761039 ~ 52761451 (-)
LOC110530043 LOC106568739 other downstream 1996178 51252355 ~ 51259061 (-)
G719151 NA other downstream 2315726 50936928 ~ 50939471 (-)
LOC110530011 LOC106568709 other downstream 3365945 49866272 ~ 49937001 (-)
G718489 NA other downstream 3417501 49785674 ~ 49837696 (-)
G722459 NA other upstream 239633 53495804 ~ 53499730 (-)
G722602 NA other upstream 544928 53803443 ~ 53856065 (-)
G722670 NA other upstream 667713 53926228 ~ 53927959 (-)
G722761 NA other upstream 865864 54124379 ~ 54139341 (-)

Expression

LOC110530106(LOC106568974) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110530106(LOC106568974) Expression in each Bioproject

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LOC110530106(LOC106568974) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network