Gene
RNA
| Item | Value |
|---|---|
| gene id | nsun4 |
| gene name | nsun4 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 53342603 ~ 53360245 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| nsun4 | Predicted to enable methyltransferase activity. Predicted to be involved in rRNA methylation. Predicted to act upstream of or within methylation. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human NSUN4 (NOP2/Sun RNA methyltransferase 4). |
| description |
|---|
| 5-methylcytosine rRNA methyltransferase NSUN4 |
| id | name | namespace |
|---|---|---|
| GO:0032259 | methylation | biological_process |
| GO:0008168 | methyltransferase activity | molecular_function |
| id | description |
|---|---|
| K21970 | NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036985657.1 | True | 1445 | mRNA | 0.53 | 6 | 53342603 | 53360245 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110530106 | LOC106568974 | coding | downstream | 84088 | 53255197 ~ 53258515 (-) |
| dipk1aa | LOC106568980 | coding | downstream | 274817 | 53059646 ~ 53067786 (-) |
| LOC110529119 | LOC106569026 | coding | downstream | 320457 | 53019506 ~ 53022146 (-) |
| LOC110530096 | LOC106569026 | coding | downstream | 324499 | 53015178 ~ 53018104 (-) |
| LOC110530097 | NA | coding | downstream | 340934 | 52999599 ~ 53001669 (-) |
| LOC110529122 | LOC106568971 | coding | upstream | 101789 | 53462034 ~ 53478913 (-) |
| LOC110530111 | LOC106598945 | coding | upstream | 140211 | 53500456 ~ 53585621 (-) |
| LOC118965526 | NA | coding | upstream | 167358 | 53527596 ~ 53533919 (-) |
| LOC110530113 | LOC106598949 | coding | upstream | 239390 | 53599635 ~ 53635592 (-) |
| LOC110530114 | LOC106568966 | coding | upstream | 275543 | 53635788 ~ 53709367 (-) |
| G721638 | NA | non-coding | downstream | 1641 | 53340741 ~ 53340962 (-) |
| G721631 | LOC102314236 | non-coding | downstream | 11607 | 53330465 ~ 53330996 (-) |
| G721599 | NA | non-coding | downstream | 46275 | 53296109 ~ 53296328 (-) |
| G721526 | NA | non-coding | downstream | 153788 | 53188582 ~ 53188815 (-) |
| G721525 | NA | non-coding | downstream | 155596 | 53186667 ~ 53187007 (-) |
| G721685 | LOC106594194 | non-coding | upstream | 15785 | 53376030 ~ 53376247 (-) |
| G721704 | NA | non-coding | upstream | 27230 | 53387475 ~ 53387680 (-) |
| G721747 | NA | non-coding | upstream | 70458 | 53430703 ~ 53430952 (-) |
| G721766 | NA | non-coding | upstream | 83547 | 53443792 ~ 53444085 (-) |
| G721782 | NA | non-coding | upstream | 97577 | 53457822 ~ 53458026 (-) |
| G721275 | NA | other | downstream | 581152 | 52761039 ~ 52761451 (-) |
| LOC110530043 | LOC106568739 | other | downstream | 2083584 | 51252355 ~ 51259061 (-) |
| G719151 | NA | other | downstream | 2403132 | 50936928 ~ 50939471 (-) |
| LOC110530011 | LOC106568709 | other | downstream | 3453351 | 49866272 ~ 49937001 (-) |
| G718489 | NA | other | downstream | 3504907 | 49785674 ~ 49837696 (-) |
| G722459 | NA | other | upstream | 137903 | 53495804 ~ 53499730 (-) |
| G722602 | NA | other | upstream | 443198 | 53803443 ~ 53856065 (-) |
| G722670 | NA | other | upstream | 565983 | 53926228 ~ 53927959 (-) |
| G722761 | NA | other | upstream | 764134 | 54124379 ~ 54139341 (-) |
