XLOC_025833 (si:ch211-165g14.1)


Basic Information

Item Value
gene id XLOC_025833
gene name si:ch211-165g14.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58472305 ~ 58487848 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050708
ATTGTGCTGCGCGTTCCGGTCGCCATGTTTAGCCGGATTCACTCAGTTAAACAGAGGAACTGCCTTGTCCTGCTGTCGCCTGTACTTTTACTCTTTTATAGGATTTTAGACcagattcatttttaaaatagccgTGCCTTTGGAAACATGTTGCGGCAGTGAAGGGACGCGCTATTCCTCTGTTATGGACCCTCATGACCAGGCTGACGTCATGCACCTTCAGGACTCTCGTTCCTCAGCTCTGGATCTGTCGGTGGGCTGCAGGCATACAAACCCAATAGAGGCTCTGGATCTGGTGAAGAAGCCTAGCTGGTGTGGCCTTACCTCAGGAAGCAGGAGTGTCAACCTGTCAGAGTCCTGCTACATCGAACAGACTCCACCCCATCGTCCCGAGCCAGGAGAGACACCAGCCCATGACTCCTACTCCATCCCCTTACCCCTAATCAATGGCATGCCCTCTGTGGCACAGATACTGTCCCAGTGCTCATCCACAGACCAAGAGTTTACAGATTGTCATGAGGAAatggaggaagaagaggaggaggaggtgttgaTGCAAACTAAACAGTGTCACAAGAACGCAGAGTCTGTGCTGGAAAACAGCATTCTAGGAGGTAGGATAGCGCACGTCGTATTAGAGAAACATCCACAAGACATTGGGAGTGACACAGTTTTTTCTAAGGGCTCGTCATTTTTACCTCAGGACTCCAGTGCTGCTGCGAACACACTTCACTCCACCAGCTCAGCAGCAGAGCAGACCGCCATCGAAACCCTCGCATCCGAATGTACAAAAACATCTACCGAGAGCACCTCCAGTGATGCCGACAGTGACATCATTGAGGTTCCAGTAAGCAACTCTAGATGCACAACCCGCCCAAACTTGCGTCCCCGACCAACAAGTGTTATAGTCAGCGATACAAGCGGCCGGACGCTCAGAAGTTCCCGCTTAAAGCAGCAGGTTGATGCTGATCATCAAATGAACTTCTCTCCCAAAAATGTGAACAGCGTCTACACTATGGATGAAGCCGTTTTTGAAACCGCCAACCATAGGGTTGGCTCCGAATCCAAATCGCTGCTGTCTTGGATGGAGTCAGTGTTGATCCCCATTTCCCCGGAAGACAGCGAACAAGACACCAATTCTTCTTTCCCTAAAAACTTCCCATCTACCTCCGATGCAGAAAACTCAAGCATCTTAAGGTCTCCAGAGAATCGGAGATCATCATCTTCAACGCCAAGCCATCAAGAAAGGACTCCACCTTCGAAAAGCAGGAAACGGGCAAAACCAAGGCCCAAACCGAGACCCAAACCAAGACCTAAACCCAAGAAACAGCCGAAGAGAGCGGCGCCAGGCCCCAAAACGACGAAGAAAAGACGACGGAGGAAACCTCAGCCATCAGGACCGTCATCCATGTTTTCTCCTAAAGAGCCGGAGATCAAACTAAAATTTGCAAATCACAAAAGCGAGAAGAAAGAGGTTCGGACTGCCGTTCACTGCTTCGTGCCGTACATTCGTATGGAGTTCTCGTCCTGCACAATTGTCAATTTTAGGGAGGAGGAGGTGGCCTCAAAGAAAGGCTCCCAGCTTGCAGACTCAGGGGTCATCCCAAAGACATCCTGTCTACAGCTGGGTCGCATTGGCTCTGACGCCAGGCTTCAGGAAACGCGTTTTTGCTGCCTGTGTGGAAGTACTGGGAATGTTGAGGGTCTTGGGGATTTACATGGACCGTACCATCGCAGTGGAGCTCACCCCGTCTGTAAGGTTGACAGCAGCCTTCCTCTGGCCTTAAAACAAGAGCCCGACTGCAGCGACGTGGACTCGTTGGACAGTTTAGAGGACGGTGGGTCTCAAGTCAAACGACGGAGGAAGGAGAACGGCTGCGAGAGTCTGGAGGAGTCTGGTGCGCCTGGGGAGCACTGGATACATGAGGACTGTAGCATCTGGACGGCAGGCGTCTTTTTGGTTAAAGGGAAACTCTACGGACTGGAGGAAGCAATCCGGCTCGCGCAAGAATCAGTTTGCTCGTTCTGCAACAGGGTTGGTGCCACTTTGGGATGTTTCTTCAAAGATTGCCCTCAAAAATACCACTTCCCTTGTGCCGTGCAGTCAGGCAGTGCTCTCAACGAGGAGAACTTCACCATGAGATGCCCCAAGCACAAGAATAAAGTGTCCAGAATGAGCGTCAGCAGACTGAAGAACAGATGACGTTTGGCAGGAGTTGAGATATCTTTGAAGGCAGACTTCACCAGACATGGGTTTATCCGGCTGTGGAGCAGACGCCTGATGTGTTTACAGCTGATTTTTGTACTTCACATGTACGTATGAGTGTTTACACGTGCTCTCAGGCAGATAGATGAATGTTGGGACTGGATGTGCTGTTTTGAGACGccgctggctttttttttttcatctggcaCTACAGCGGTACCCTCGGATGATTGATGCTGGATGATCTTCATTACATTCCTCAGTGTTAAAAGCactcacagttttttttaaccatcAACTCTCTTGCATTGACTCTAGGCCAAACATCTCCATCTTTAGACTGAAGCACCTTTGGTCATGTCTACACAACAGTGACGTCATTAATAATACCCTCGAATCATCTGAAGAAGCAGGAtgtgctttattttttaattttctcctTTATTTATAGTCCTGAAGAAGAGCTTCAGATGATTAGTGCTGTTAGACATGCTGTCCAATCTAAATCAGTGCTGTCCTCATCACATAAAACTGAAATGCTGAGTGAACTCCGGTGGTACCGTATGCACTAATGAGTGagcatatttatttctatttatgttTAATGCATATGCGTCTATTTATTTGCCAATGAACAGCCTCCTTCAAAGAGACAAGAGTGTGTTTTAGCACCTTGTGTGTCCGCATTAAAGGAGCCGTTGTGATTTAATGTCGTCGGTAACAGCTACAGGGTGCTTTGAATATGAATTTCCGTCGATTCGTTTAAAACGCGTGGCCTGAATCAAGCAGTCGCAGTGTCTGTAGGGTTTCCCCATTTCACCTGATGCCTTGTGAAGTCTCCAGTTCTGtttcaataaatgtttttattctacatTCCTACCATTGTGTGCGACGCTCCCTTCTTTTGGCATTGATGTGTTGATGCACTGTTTGTCCTGGAGGTGGTGCTGAACAACCTTAATGTGTTGATGTCTGTTTTACAGCTGATGAATCTTATTCACAGGCAGCCACTGCTTATTACTAAATCAGACTGATGGGTTTAGGAAGTTTGAACCTTTTCATCATAGAAAACATTACAGTGGTTTCcacaaataattttaaatcaGCTGCATAACCTGAGCTCTCATATATACTGTAGTgttgaaaatgtgcatatttgAGTTTAATACAGACACTATTGAAGttctaaataaatgaattcaaggTTTTCCTGTGTGGAGGTTCTTCTCTTGTatctaataaaagaaaacaaatcaaaaagcatttttaatcattttaggtTGTTTTGCTGACACCACTGGcagattttgcttgttttaaggacaaaaactgtaattaaatttttttctggcacattttgcttgttttaaggacagaaaaaaagtaatttgttgtcctttaaacaaactaaatctaCCAGAAAAGGGTTAGAATTACagtttttgtccttaaaacaagcaaaattatgttttttttagtcTTCAAAACAAGCACAATctgccaggaaaaaaaaaagttagaatcaGTTTTTGtcttcaaaacaagcaaaatctgCTAGAAAAAAAAGGTtagaattacatttttatttgtccttaaaacaagcaaaataacagtttttgcttgttttaaggacaacAATTGTAATTCTAACCCTTTTCTGGAAGATTTTGCTTGAAGCAAAAACTAATTCTAACCTTTTTTTGTCAGattttgctttttttctagcAGATTTTGCGCAAAAAAagtaattttgcttgttttcaggacaaaaactttaattttaacttttttttgcagattttgcttCATTTAAGGACAAAAACTGTAATTCTAATTTTTTTTCTGGcagattttgcttgttttaaggacagaaaaaaacattttttttgtccttaaaacaacCTAAATCTACCAGAAAAGGGTTAGAATTACagtttttgtccttaaaacaagcaaaattatgtttttttagtcTTTGAAATAAGCACAATctgccaggaaaaaaaaaaagtcagaatcaGTTTTTGTCTTCAAAATCTGCTAGAAAAAAGGTtagaattacagtttttttttgtccttaaaacaagcaaaataatcgtttttgcttgttttaaggacaacAATTGTAATACTAACCCTTTTCTGGaagattttgcttgttttaaagcaaaaactaattctaacgttttttgtcagattttgcttttttttctagcAGATTTTGCGCAAAAAAagtaatttagcttgttttcaggacaaaaactttaattttaactttttttttttttttttgcagattttgcttAATTTAAGGACAAAAACTGTTATTCTAATTTTTTTTCTGGcagattttgcttgttttaaggacagaaatttttttattttttgtctttaaaacaaccTAAATCTACCAGAAAAGGGTTAGAATGACcgtttttgtccttaaaacaagcaaaattatgtttttttagtcTTCAAAACAAGCGCAATCTGCcagggaaaaaaaaattgaatcagTTTTTGtcttcaaaacaagcaaaatctgctagaaaaaaaaaggttagaattacagtttttttttttttttgtccttaaaacaagcataataaccgtttttgcttgttttaaggaattaCTTGTTTTAACTGTAATTCTAACCCTTTTCTGGAAGATTTTGCCTGTTTTGaagaaaaaactaattctaaccttttttgtcagattttgcacaaaaaaactattttgcttcTTTTCAGGACAAActttaattttaactttttttttgcagattttgcttAATGTAAGGACAAAAACTGTAAATCTAACCTTTTTCTAACAAATTTTGCgcaaaaaaaactgattttgcttgttttaaggacaaaaactGTAATTCTAACCTTTTCTGGcagattttgcttgtttaaaggacaaaaacatttatttctatttctgtttaatgcatATGCGTCTATTTAGCACCTTGTGTGTCCGCATTAAAGAAGCCGTTGTGATTTAATGTCGTCGTTTACAGC

Function

symbol description
si:ch211-165g14.1 Predicted to enable metal ion binding activity. Predicted to be involved in circadian regulation of gene expression and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-601 Predicted to enable metal ion binding activity. Predicted to be involved in circadian regulation of gene expression and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000086459

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050708 True 5235 mRNA 0.40 6 58472305 58487848

Neighbor

gene id symbol gene type direction distance location
XLOC_025832 AL772300.1 coding upstream 1786 58469935 ~ 58470519 (+)
XLOC_025831 zgc:171489 coding upstream 3470 58455428 ~ 58468835 (+)
XLOC_025830 NA coding upstream 43181 58425000 ~ 58429124 (+)
XLOC_025829 sdr42e2 coding upstream 55337 58379450 ~ 58416968 (+)
XLOC_025828 vwa3a coding upstream 99654 58354852 ~ 58372651 (+)
XLOC_025834 NA coding downstream 66582 58554430 ~ 58595650 (+)
XLOC_025835 NA coding downstream 92741 58580589 ~ 58615939 (+)
XLOC_025836 NA coding downstream 100356 58588204 ~ 58624381 (+)
XLOC_025837 NA coding downstream 166676 58654524 ~ 58680069 (+)
XLOC_025838 FP016018.4 coding downstream 167527 58655375 ~ 58659343 (+)
XLOC_025429 BX649540.1 misc upstream 28223269 30248739 ~ 30249036 (+)
XLOC_025827 AL772300.2 non-coding upstream 118718 58344862 ~ 58353587 (+)
XLOC_025826 NA non-coding upstream 166427 58300038 ~ 58305878 (+)
XLOC_025824 NA non-coding upstream 259619 58210375 ~ 58212686 (+)
XLOC_025841 CU571382.1 non-coding downstream 180126 58667974 ~ 58669493 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_02087239_02090806 NA coding CI01000112 null 2086709 ~ 2090806 (-)