Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110530111 |
| gene name | LOC106598945 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 53500456 ~ 53585621 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase-like isoform X1 |
| id | description |
|---|---|
| K00781 | SIAT6; neolactotetraosylceramide alpha-2,3-sialyltransferase (sialyltransferase 6) |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021612937.2 | False | 3098 | mRNA | 0.46 | 12 | 53500456 | 53569137 |
| XM_021612934.2 | False | 3154 | mRNA | 0.46 | 13 | 53500456 | 53569139 |
| XM_021612935.2 | False | 3499 | mRNA | 0.46 | 12 | 53500456 | 53585618 |
| XM_021612938.2 | False | 3451 | mRNA | 0.46 | 11 | 53500456 | 53585618 |
| XM_021612931.2 | False | 3555 | mRNA | 0.46 | 13 | 53500456 | 53585620 |
| XM_021612936.2 | False | 3717 | mRNA | 0.46 | 12 | 53500456 | 53585620 |
| XM_021612939.2 | False | 3669 | mRNA | 0.46 | 11 | 53500456 | 53585620 |
| XM_021612932.2 | False | 3772 | mRNA | 0.46 | 13 | 53500456 | 53585621 |
| XM_021612933.2 | True | 3741 | mRNA | 0.46 | 14 | 53500456 | 53585621 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110529122 | LOC106568971 | coding | downstream | 21543 | 53462034 ~ 53478913 (-) |
| nsun4 | nsun4 | coding | downstream | 140211 | 53342603 ~ 53360245 (-) |
| LOC110530106 | LOC106568974 | coding | downstream | 241941 | 53255197 ~ 53258515 (-) |
| dipk1aa | LOC106568980 | coding | downstream | 432670 | 53059646 ~ 53067786 (-) |
| LOC110529119 | LOC106569026 | coding | downstream | 478310 | 53019506 ~ 53022146 (-) |
| LOC110530113 | LOC106598949 | coding | upstream | 14014 | 53599635 ~ 53635592 (-) |
| LOC110530114 | LOC106568966 | coding | upstream | 50167 | 53635788 ~ 53709367 (-) |
| LOC110530116 | tm16h | coding | upstream | 95987 | 53681608 ~ 53712234 (-) |
| trnak-cuu-2 | NA | coding | upstream | 111007 | 53696628 ~ 53696700 (-) |
| plvapa | LOC106568963 | coding | upstream | 136551 | 53722172 ~ 53728671 (-) |
| G722459 | NA | non-coding | downstream | 3029 | 53495804 ~ 53499730 (-) |
| G721825 | NA | non-coding | downstream | 19331 | 53480893 ~ 53481125 (-) |
| G721782 | NA | non-coding | downstream | 42430 | 53457822 ~ 53458026 (-) |
| G721766 | NA | non-coding | downstream | 56371 | 53443792 ~ 53444085 (-) |
| G722488 | NA | non-coding | upstream | 9935 | 53595556 ~ 53595773 (-) |
| G722523 | NA | non-coding | upstream | 92304 | 53677925 ~ 53679995 (-) |
| LOC110530934 | LOC106568959 | non-coding | upstream | 239403 | 53818706 ~ 53880785 (-) |
| G722612 | NA | non-coding | upstream | 243058 | 53828679 ~ 53829059 (-) |
| G721275 | NA | other | downstream | 739005 | 52761039 ~ 52761451 (-) |
| LOC110530043 | LOC106568739 | other | downstream | 2241437 | 51252355 ~ 51259061 (-) |
| G719151 | NA | other | downstream | 2560985 | 50936928 ~ 50939471 (-) |
| G722602 | NA | other | upstream | 217822 | 53803443 ~ 53856065 (-) |
| G722670 | NA | other | upstream | 340607 | 53926228 ~ 53927959 (-) |
| G722761 | NA | other | upstream | 538758 | 54124379 ~ 54139341 (-) |
| G722854 | NA | other | upstream | 665493 | 54251114 ~ 54251546 (-) |
| G722864 | LOC106581475 | other | upstream | 696064 | 54281685 ~ 54281978 (-) |
