LOC118965526


Basic Information

Item Value
gene id LOC118965526
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53527596 ~ 53533919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052901.1
agtgccgttttctttgataaaatcaatttttatagcctaaatctaaacattttgtaaactatttgtgccgtgaattccatctctatcaaTTTTTTACGGAGCTTTCGGCGTGTTTCGCCCCTGTAAACAATCGTTTATATAGTCATGGTGggtttcagtgcattcctctggatgtttgcaacacagtCAAAGGTCATTGTTTTTTTTGCGGGGAGAATTGACCGAAGTGAACTGATTTTGAAGACAGCGATTAAATGACTACCTGACGCACCAATAATTTTAGCGAAGCTTCATTGATTGActatttctgcccaatgaccactgatcttcttgaaatctagctgggtagatagccaatgagctgaggtaaacgccagtatgtAATGGTTTGGGGTTGGACCACAATTCCTTGGTTGTAATCGCACGCGCAGGGAACTCCATTTTTGCCTTGACGATCAGAGCAGTTGCTGTAAGGCTTTTTACGTGCAGCTGTATTTTGGAAAGTTGTAgtttcaacgatttcattgaagataTCCTGGCGAATACATCATGAATACAAAGTGAAGTCAAActctaaagtaaaagtgaaagtgagacagattttgTTTTTTGAGGAATCTTGGAGTGTTATGATTCAAACGAACtgaggagctgtttctgcaaggacCGGACGTACTTCTGGATggtgatagcgactccgactgggaggccccggtgccaagctgcccACTCTACCTGTGCCCCCCAatggtgttcatatgccacagttcattactgcaggcatgactgcctcagggccaaaagggcacagcatggaggcgtcgttgtgttctgtgtcgcatgaaatgcaccacttgttcagtttgcctctgctttacatcagaaagagactgctatgggacagGGCACAGGCAGCAAAATACTGTGACGAGGATTTCCAAGGGGTGtactgtttatttttttgtttattcatttattttttttctatatttatttttgtaaacatttttgttgttgtgtgtgtgtgcgtgtgtgtgttagaattgctttttgatgtgttgtatatagttatttgcactgctgtatatagttataggtcatttcaccaattcggccacttgggtacatttgggcaacttgtgtgggacacctgagtgacttcatgctaaatgtcatgtagctcacccattcctgaagttatcaatctgaaactttgcacacctacagttgccctcctgtgttatccatcaaaattatatccagcatcctatctgactgtgtggcgATTCTAGTACATTTGAAAGATGatactacaacaa
>TU820773
GAGCAGATCTGTCTGGAATATCAGCTGGTAAGTAGCAGGGACAGTGGAAATGGCGAACATGGAAAACATTTATCTGAGCTCTGGCTCCTCACAGATCAGCCTTAGATCTGCAGTGGAAGGAATACTTTCTCTCATTAAATAAATCACTGGTCAAAAGTCCTCGGTCTTCcatgaaggcactgtagttgggatgcatgcatgcacgcgcacacacttaACTCAGTCACACCAACTCACTATTTTGGGTCGAACTTGCCTCATGCAGCTCATTGTAACTCACAAACTAAATTGATTACGTTAATTTTTTTCTCATTgatatacacacactaccccataatgacagtgaaaataggtttttagacatttttgaaattgTATTGAAAGTTAAATACAGAAGTGTTTACACCCCTGAGTTAATCATTTGTAGGAGCACATTTGGTACCGATTACAGCTGTGGGTCTTTCTGGGTGAgttctaagagctttccacaactggattgtgcaacatttacccATGTATTGTTTTCAAAATTCAAGCTCTgtcattggttgttgatcattgctaggcaaccattttcaggtcttgctatagattttcaagtagattcaaGTCCAAACTGAATCTCTACCACTCCaggacattcactgtcttcttggtaagcaacgccaatgtagatttggcctttttttttttaagttattgtcctgctgaaaggtgaattcatctcctagtgtctggtggaaagcagactgaaccaggttttcctctaggattttgcttgtgtTTAGcaccattccgtttcttttttatcctgaaaaactccccactatgcttgaaaatatggagtgtagtactcagtaatgtgttgtattggatttgcattcagatttgtattcaggacaaaaagttaattgctttggctgacaggatgcatgttttggaatttaaaaaaaaacgtaattCCACTTTCATTGTAAAtcagattttgttcttaactgactttcctagataaaaaatatttaaacattgtgatgtacagttgaagttggaagttaggttgggttggagtcattaaacctaACTGGGTTGGAGTCATCTGGGTTGGAGTCATCCAACCTAacctacacttaggttggagtcattaaaacttgtttttcaaccactccacaaatttcttgtttgcaaactatagttttggaaagttggttaggacatctactttgtgcacgccacaagtaatttttactacaattgtttacagacagattatttcaatataatccactgtatcacaattccagtgggttagaagtttacatacactaagttaaacagcttggaaaattccagaaaattatgtcatggctttagaagcttctgactcaaatgatgtcaattagcctattggaggtgtacctgtggatgtatttcaaggcctaccttcgacctcagtgcctctttgcttgacatcatgggaaaataaattgtagacctacacaagtttggatcatccttgggagcaatttccaaaggcctaaaggtaccacgttcatctgtacaagcaatagtacgcaagtataaccaccatgggaccacgcagccgtcataccgctcaggaatgagacgtgttctgtctcctagagatgaatcccagaacaacagcaaatgaccttgtgaagatgctggaggaaacgggtacaaaagtttctatatccacagtaaaaacgagtcctatattgacataacctgaaaggctgctccaaaaccggcataaactcacactacggtttgcaactgcacatggggacaaagatcgcactttttgaagaaatgtcctctggtctgatgaaatacaaatagaactgtttggccataatgaccatcgttatgtttggaggaaaaagggggaggcttgcaagccaaagaacaccatcccaaccgtgaagcacggaggtgacagcatcatgttgtggggttgctttgctgcaggagggactggtgcacttcacaaaatagatggcatcatgagggagaaaaattatgtggatatattgaagtaacatctcaagacatcagtcaggaagttaaagcttggtcacatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatgttttaaggacaacaaagtcaaggtattggcgtggccatcacaaagccctgacctcaatcctatagaacatttgtggtcagaactgaaaagtgtttgcgagcaaggaggcctaccagcctgactcagttacaccagctctgtcaggaggaatgggcaaaaattcacccaatttattgtggaaggctacccgacacgtttgacccaagttaaacgttttaaaggcaatgttaccaactactaattgagtgtatgtaaacttctcacccactgggaatgtgatttaaagaaataaaagttgaaataaatcattcactactattctgacatttcacattcttaaaatcagtggtgatgctaactgaccctaaaaatgtcaggaattgtaaaaactgagtaagtgtatttggctaaggtgtatgtaaacctccgacttcaactgtatgtactgcCACTGAGCACAAAGAGAGGCATTACAGTAGTTAAAGGGACCTGTTATGGCTGCGATCCCCGTACAGGGACCAACATCAGTGGAAATTtcagtgacaactaaaaatacaatTTCGTATTTTTAGTTtgaaacattcttgaaaatgcaagtgtcttacacccttcaaaagattagaatcttggtaatcaaactacgttttccaatttaaaatagctattacagagaacaaatcccatgcttttgtttgagaagagcaatcaagaacagaaacattttccgccatgacagtttctagacattcacatctgaaggtaaaattatgacttacattctgatatcttgctcttatttctcttcctgagtATCCCAttgatcaaatgaagtgccgttttctttgataaaatcaatttttatagcctaaatctaaacattttgtaaactatttgtgccgtgaattccatctctatcaaTTTTTTACGGAGCTTTCGGCGTGTTTCGCCCCTGTAAACAATCGTTTATATAGTCATGGTGggtttcagtgcattcctctggatgtttgcaacacagtCAAAGGTCATTGTTTTTTTTGCGGGGAGAATTGACCGAAGTGAACTGATTTTGAAGACAGCGATTAAATGACTACCTGACGCACCAATAATTTTAGCGAAGCTTCATTGATTGActatttctgcccaatgaccactgatcttcttgaaatctagctgggtagatagccaatgagctgaggtaaacgccagtatgtAATGGTTTGGGGTTGGACCACAATTCCTTGGTTGTAATCGCACGCGCAGGGAACTCCATTTTTGCCTTGACGATCAGAGCAGTTGCTGTAAGGCTTTTTACGTGCAGCTGTATTTTGGAAAGTTGTAgtttcaacgatttcattgaagataTCCTGGCGAATACATCATGAATACAAAGTGAAGTCAAActctaaagtaaaagtgaaagtgagacagattttgTTTTTTGAGGAATCTTGGAGTGTTATGATTCAAACGAACtgaggagctgtttctgcaaggacCGGACGTACTTCTGGATggtgatagcgactccgactgggaggccccggtgccaagctgcccACTCTACCTGTGCCCCCCAatggtgttcatatgccacagttcattactgcaggcatgactgcctcagggccaaaagggcacagcatggaggcgtcgttgtgttctgtgtcgcatgaaatgcaccacttgttcagtttgcctctgctttacatcagaaagagactgctatgggacagGGCACAGGCAGCAAAATACTGTGACGAGGATTTCCAAGGGGTGtactgtttatttttttgtttattcatttattttttttctatatttatttttgtaaacatttttgttgttgtgtgtgtgtgcgtgtgtgtgttagaattgctttttgatgtgttgtatatagttatttgcactgctgtatatagttataggtcatttcaccaattcggccacttgggtacatttgggcaacttgtgtgggacacctgagtgacttcatgctaaatgtcatgtagctcacccattcctgaagttatcaatctgaaactttgcacacctacagttgccctcctgtgttatccatcaaaattatatccagcatcctatctgactgtgtggcgATTCTAGTACATTTGAAAGATGatactacaacaataaaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052901.1 False 1319 mRNA 0.42 2 53527603 53530934
TU820773 True 4311 lncRNA 0.40 2 53527596 53533919
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110529122 LOC106568971 coding downstream 48690 53462034 ~ 53478913 (-)
nsun4 nsun4 coding downstream 167358 53342603 ~ 53360245 (-)
LOC110530106 LOC106568974 coding downstream 269088 53255197 ~ 53258515 (-)
dipk1aa LOC106568980 coding downstream 459817 53059646 ~ 53067786 (-)
LOC110529119 LOC106569026 coding downstream 505457 53019506 ~ 53022146 (-)
LOC110530113 LOC106598949 coding upstream 68701 53599635 ~ 53635592 (-)
LOC110530114 LOC106568966 coding upstream 104854 53635788 ~ 53709367 (-)
LOC110530116 tm16h coding upstream 150674 53681608 ~ 53712234 (-)
trnak-cuu-2 NA coding upstream 165694 53696628 ~ 53696700 (-)
plvapa LOC106568963 coding upstream 191238 53722172 ~ 53728671 (-)
G722459 NA non-coding downstream 30176 53495804 ~ 53499730 (-)
G721825 NA non-coding downstream 46478 53480893 ~ 53481125 (-)
G721782 NA non-coding downstream 69577 53457822 ~ 53458026 (-)
G721766 NA non-coding downstream 83518 53443792 ~ 53444085 (-)
G722488 NA non-coding upstream 64622 53595556 ~ 53595773 (-)
G722523 NA non-coding upstream 146991 53677925 ~ 53679995 (-)
LOC110530934 LOC106568959 non-coding upstream 294090 53818706 ~ 53880785 (-)
G722612 NA non-coding upstream 297745 53828679 ~ 53829059 (-)
G721275 NA other downstream 766152 52761039 ~ 52761451 (-)
LOC110530043 LOC106568739 other downstream 2268584 51252355 ~ 51259061 (-)
G719151 NA other downstream 2588132 50936928 ~ 50939471 (-)
G722602 NA other upstream 272509 53803443 ~ 53856065 (-)
G722670 NA other upstream 395294 53926228 ~ 53927959 (-)
G722761 NA other upstream 593445 54124379 ~ 54139341 (-)
G722854 NA other upstream 720180 54251114 ~ 54251546 (-)
G722864 LOC106581475 other upstream 750751 54281685 ~ 54281978 (-)

Expression

LOC118965526 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

LOC118965526 Expression in each Bioproject

Bar chart with 21 bars.
LOC118965526 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network