XLOC_025834


Basic Information

Item Value
gene id XLOC_025834
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58554430 ~ 58595650 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052824
ggcaaagtctgggtgaggctgggccgcataagggatttcacacaaaaaagtcctcaaatgtcattattaacagttttaattatttcttctaaacatgaagtgtcctgaacattaatagaacattgagtgaagattatgaacagttcttctgaacatggcatcttttgcctacttcttgctgccagagacttgacagcgcttcttctcacaaatctgaaccacatttggctttagagcggaagcagttgagaccctcagtatggcttgaagatgatcatcattaagtctatacctgtactttgacttattgaagtcctagggaaaaaagtgggggaactcactcaaaacttccattccctcacctaaaaaaaggcgtatatatgtataaataaaacacccccaccccactccagtcacatcagtctgtaccagtctgtatctacctataatatcaatatatataagatgcagggcaggcacgtgcacacatagggctcaacctgtgccgagcacatgccctttttagtcttgcatagaaagtgcccttccaaaatgatcaaaagtgcccccgcgacgcgacacaccctcggtcccgcccttcaatAGGcgcgcattaacaccgctcttgagtacgcgcgcgactacacagctgatcagaacgcgcgcgacaacgcgcattgagtgacaagcgcgctgtgtacggatagaatcagcggagcggggagcgctctctctcaccgctccgctgattctgtcagagtacagcggtcggcgcgggccacaaaatattgcactgagggccgcaaatggcccgcgggccgcgagtttgagacccctggtctagaccaAGGGTGGCCATCCCTGCTCTAGTGAATAAGATGCTCCTCTGAATGGCAGACGACACACAGAAACTAACTGTGGTGTTTTCTTCTGTTCGGAGTCTCCACATGGTGTCTGATGTAGGAAACAACAGCATCAATATTCAGCATCAAAGCTGAGCTGCCTGCAGAATTATTAAACAGCATTTCAGAAAGTGTGAGAGATCATATTGTCCTGTGTAGAAGATTATCTTGATTCAGTATAATGTTCTGATTATGCACATTCATAAGGGAAAACTACTCTTCTGTATGTATAATTCAGATGACTGTGTAAAGGATTGATGCCATTTAAACTGTTTAAAGCTTGAGAAACACATAAGCATAAAACAAAACTGTCCAGAAGCTGGACAAACACAACAGCTATTGATTATCCTTCAGGAAATGATACTGTATAAGGTTTAAAAATGTCCTGCTGGCTTCAAAACCTCTCCAGAGCAGTTTATTCTGCTCAGAATCATTCGACAGCACCTGTCCTCTCCTCCTGGTGTTCACAGTGGAAATAAAACACCTCTTGAGTTTCCTCTGATGGATCTGATGAGTGTAAATGTTGCATAACTCTGTCTTGGCACGCGAGTGACAGAAGAACAGAGGAAGAGTTTTCTGGAGGGAATCAGACGGCTGATATCTGATTCTGAGCTGTTCTGTGTGAGCAGCAGACAGGCTGTGACGTTGGCAGTCTGTTGTTTAAATGGCGTCCAGCAACAATTGAGTCCAAGACAGAGACATGTTCTCCTCCTCTAGACCCGCGGGTTCAGAAACACTCCCCAGATTACAGGCGTTCCTGTGGGATCAGGAGCTggagaattgaattgaatgaaccGTTGCTGTGAAAGAGCCACTTCCACTGAAAACAAGCAGCTGATAGCCGTCCTGGCCCACTGAGACTCCCCACCCACTCACAGCACAAAGGTCATGATCAGGAAATGAGGAGCTTTTCAGCATTTCAAGAAGTCATAATATCCCAGTGCAGAGACAAGCAACAGGGCTGAAACTACAGTGAATAATAATGAGCATCTTCACTGTTTAGCGCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052824 True 1910 lncRNA 0.46 2 58554430 58595650

Neighbor

gene id symbol gene type direction distance location
XLOC_025833 si:ch211-165g14.1 coding upstream 66582 58472305 ~ 58487848 (+)
XLOC_025832 AL772300.1 coding upstream 83911 58469935 ~ 58470519 (+)
XLOC_025831 zgc:171489 coding upstream 85595 58455428 ~ 58468835 (+)
XLOC_025830 NA coding upstream 125306 58425000 ~ 58429124 (+)
XLOC_025829 sdr42e2 coding upstream 137462 58379450 ~ 58416968 (+)
XLOC_025837 NA coding downstream 58874 58654524 ~ 58680069 (+)
XLOC_025838 FP016018.4 coding downstream 59725 58655375 ~ 58659343 (+)
XLOC_025839 FP016018.1 coding downstream 60662 58656312 ~ 58656994 (+)
XLOC_025840 CU571382.4 coding downstream 68292 58663942 ~ 58665324 (+)
XLOC_025841 CU571382.1 coding downstream 72324 58667974 ~ 58669493 (+)
XLOC_025429 BX649540.1 misc upstream 28305394 30248739 ~ 30249036 (+)
XLOC_025827 AL772300.2 non-coding upstream 200843 58344862 ~ 58353587 (+)
XLOC_025826 NA non-coding upstream 248552 58300038 ~ 58305878 (+)
XLOC_025824 NA non-coding upstream 341744 58210375 ~ 58212686 (+)
XLOC_025842 CU571382.1 non-coding downstream 73924 58669574 ~ 58673206 (+)
XLOC_025843 NA non-coding downstream 86907 58682557 ~ 58682886 (+)
XLOC_025844 CU571382.5 non-coding downstream 98526 58694176 ~ 58695037 (+)

Expression


Co-expression Network