plvapa (LOC106568963)


Basic Information

Item Value
gene id plvapa
gene name LOC106568963
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53722172 ~ 53728671 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612945.2
ACAATCCTGTCTTCTCACTCTCAGACAATGCTCAGGAGAGGAAACGGCTAGAACTTTACTGTTTGGACTGCCACTGTGCGCTACCTTAAGTCAGAAGGGGGATACTATCGCCGAACCACACCACTACCAGGGACTGAGTTTTCTATTTATTTGGTATTTAATTTGGTCCTCAAGAAGTGGAACCCATTTGAACCGTCTTAGTTCTGTCTGGGCTTGGCTGTAGTAAgggtgttctgtactgtactgtactgtactgtactgtgcatcTGAGGCTGAGCACCCATGTACAACAGTAGCTACTCCCAGGCCAAGTTTGGCTTGGAGGCCAGGAGGAAGATCCAGAAGCCCAGGGGGAAGAGCTGTGGCTACTACATgagggttgtcttcttcttctcctctctgatCCAGTCGCTCATCATCGTCAGTCTCATTCTCTTCCTGGTCTACGGGAGGTCCCCGGACGCGGCAGCTGAGAGCCGGGTCCGAGACCTGGAGAAGAGCTTCAACCGCCTCTCCGTTGACAACATGAACCTCCGGCAGCAGAAAAAGAATCTGACGCTTCTCCTGAATGCCACTCAGACCGACAAGATGCGCAACAACAAGGAAATGATAAATCTGCGTCAAATGGCAAACAAATCTGTCATATTCATCACCCATCTCAGAGACCAAGCGAATCAATGTGAAAACGATAAGAGAAGCTGTCAACTTAACATGTGCCGATGCCCCAGAACCATGACACCAATGATAACACTAAATGgcaacaacaacaatatacaTGAAAACCAGGTCCAGCGGCTAGAGCAATTGTTAAAGCTAGTGAGCTCCAACTTCAGTCAGACGGTGCAGTTCATGAGGATTGAGATAGAGAACACAGCCAAGGACCGGGACACCCTCACTTTGGATGCCATCTCCCTCCGGAGGGACAAGACCTCCCTGCTGAAACAGCTGGAGAGCTACAGGAAGAAGTGCAAGGAGGACTTTGTCCAATCCCTCGACGGCATCTCCAACGTCTCCAAAGCCTTCCTGTTGAAGATCGACACCCTCCTGCCCAAAGTCAGCCCCTTCCTGCTCACCTGTGAGAAGCAGCGCGACCACCTGGACCAGATCCGCAACAACTGCTCCAGTCTGTCCCGCGAGGTGGAGACCAAGTTCCAGCACTACCTGGACAACGTAGGCTCCCAGGTGTCGGAGATCCAGGGCCGTAGCGCCAGGCTGCAGGTGGAGAAAGACCAGCTAGCCGAGGACCACAACTGGTGCAGCCATAACCGCAGCGCCATGGCCCTGGAGCACCAAGAAAAGTTGCAGAAGACCCAGGAGAAATACGACCGAGAGATGGAGAAGCTGCTGACGGGCCGCATGAGGCTGCAGGGGGACAAGGACCTGGGGGAGACAGCGATGAAGGTGAAGGAGGGCGAGATCAAAATCCTCAACGACAAGATCCGGAGCCTCAACGCCTCCCTGGCCAACTGTGGCTCCAGGACCGGAATGGGTAGCCCGGGTGCAACTGGTAACACAGGGATGGGCTGGGTAGGGCCGAGTGCAACGGGGCAAGGTAACCGGGGGTCAACTGCTGGAACAGGATCGATGGCAGGAATAGGTGGGTGGGGCACATCTGCATCTGCATCTGCAACAGGAAACGGCAATACATTTTTTGGCAACACAGGAATGGGCGGGCCAGGGTCAAGTGCAACAGGAGTGGGTACTAGGGGATCAGGAGGGACAGGACTGAGTGGTGCCGGGTCAACATCAGGTGTTGCAAAGAAAATTGGACCAGGCTTGGGTACCCCCAACAGTTACAGTTTAGCAAATATCAATCAATACTTACGCGAGCTGCAGCAGTATTCCAAGCCCAACTCCGGCTCAGAAGTATCTGGGTAATCCATGGCATCTCCGATGAAAAGGGAGAAGGAATGGGAAAACCCAGTCTCCTGATATTGAGTTATGGTATgttaatacactgagtgtacaaaacattaaggacacccgctctttccatgacacagactgaccaggtgaatccaggtgaaagctctgatcccttattgatgtcacttgttaaatccacttcaatctgtgtagattaaggggaggggacaggttagagaaggATTTTTGAGCCTTGAGACAATCTAGAcacagattgtgtatgtgtgccattcagagggtgaaggggcaaaacaaaagatgtaagtgcctttgaatggggtatggtagtaggtaccggTTTGTGTCAACAACTGCAAAGCTTCTGGGTTAttcaccctcaacagtttcctgtgtgtatcaacttgacagaactgtgggaagcattggagtcaacatgggccagcatgccTGTGGAATGCTACCTACACCTTATAGAGTCCACGCCCCGAAGAATTGAGGCTGGGGGTGCAACTCAGTGCtgggaaggtgtccttaatgttttgtacacccagtgtaTGTATAATAACATTTCTATCAGCAGCAGCTGCATTGTAATGTATCATAAAAGAAGGTCTATTGCTTCTGTGACATGTATTCAAATTTGTTGCACTTTTGGGGGGCTTGAATGTCATTGGTAAACAAATACGAATGcatattatttgaatatgttgattTAGTCAGGAAAAAGGCGTGAAAGTCATAAATAATCTGTttttaatgtactgtatgtacttttATTAAAACAAAAGGGTAGTTATTGTAACTCCGGTTCTATGAATGATGCGTGACGACGTCAGTGTTTAAAAGGCACGACTTTGAATTCCACACCGCTGATTTCAGAAACATGCACCCCATCCAAGACGGATGTGAATTGTTTGTCCCCATTTGCGTCACCCATTGTGAGGATAATAGTCCCACGGCTGACAGTCCCTCCCCTTCGTCACGTTACAGACATCACTTACTGGAAGACAATTTTATCCGACCAAGATGTTTATGTTTATGTCTGCCAACCTGTCAGACCAATTGGAGCGGATGGAAGGGAAAGGTACAAACACTGGTGTATACAAAACCCAACACTAACAATACCCCCTGGGCTGGCTGCAGACTATATATTTCCATACACTTAATAAGAACATGAAACAACTCTTCTAAAAAGAACTTTGAGAAACGGAAGGATAAAGTTATCCATCAAATCTTTAGTATGTTCTTTCCCCAAAACCAGCCCCTAAAATAGCCTCGGACACCAAgcaatgttttattttgttattgctGTGTCTATGGGATATATAAACTATTGGAAATAGTATCCCAGCAACCCCTTGTCCAATAATACAAACACTAACTGTATCAGTCTATAACAGCATTCTTGCCTCAATGGGAAAGTATCATGCTTAAATTACATCTAGGAACATGCCAACCCAGATATTATACAGTATGCCATTAGGCCAACAGATTATATCCAAAGCAATTTACAGTTACacatggatacattt

Function

NR:

description
plasmalemma vesicle-associated protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612945.2 True 3419 mRNA 0.48 6 53722172 53728671

Neighbor

gene id symbol gene type direction distance location
LOC110530116 tm16h coding downstream 9938 53681608 ~ 53712234 (-)
trnak-cuu-2 NA coding downstream 25472 53696628 ~ 53696700 (-)
LOC110530114 LOC106568966 coding downstream 62166 53635788 ~ 53709367 (-)
LOC110530113 LOC106598949 coding downstream 86580 53599635 ~ 53635592 (-)
LOC110530111 LOC106598945 coding downstream 136551 53500456 ~ 53585621 (-)
ocel1 LOC106568960 coding upstream 77992 53806663 ~ 53812192 (-)
LOC110530934 LOC106568959 coding upstream 90035 53818706 ~ 53880785 (-)
insl3 NA coding upstream 186149 53914820 ~ 53917617 (-)
LOC110530121 LOC106568956 coding upstream 237326 53965997 ~ 53995304 (-)
LOC110530123 rps15 coding upstream 272458 54001129 ~ 54003188 (-)
G722523 NA non-coding downstream 42177 53677925 ~ 53679995 (-)
G722488 NA non-coding downstream 126399 53595556 ~ 53595773 (-)
LOC118965526 NA non-coding downstream 188253 53527596 ~ 53533919 (-)
G722459 NA non-coding downstream 224745 53495804 ~ 53499730 (-)
G722612 NA non-coding upstream 100008 53828679 ~ 53829059 (-)
G722659 NA non-coding upstream 176477 53905148 ~ 53905462 (-)
G722686 NA non-coding upstream 215923 53944594 ~ 53944946 (-)
G722694 NA non-coding upstream 223524 53952195 ~ 53952400 (-)
LOC110529122 LOC106568971 other downstream 258408 53462034 ~ 53478913 (-)
G721275 NA other downstream 960721 52761039 ~ 52761451 (-)
LOC110530043 LOC106568739 other downstream 2463153 51252355 ~ 51259061 (-)
G719151 NA other downstream 2782701 50936928 ~ 50939471 (-)
G722602 NA other upstream 74772 53803443 ~ 53856065 (-)
G722670 NA other upstream 197557 53926228 ~ 53927959 (-)
G722761 NA other upstream 395708 54124379 ~ 54139341 (-)
G722854 NA other upstream 522443 54251114 ~ 54251546 (-)
G722864 LOC106581475 other upstream 553014 54281685 ~ 54281978 (-)

Expression

plvapa(LOC106568963) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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plvapa(LOC106568963) Expression in each Bioproject

Bar chart with 19 bars.
plvapa(LOC106568963) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network