Gene
RNA
| Item | Value |
|---|---|
| gene id | rps28 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 53926018 ~ 53927959 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: 40S ribosomal protein S28 isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0006407 | rRNA export from nucleus | biological_process |
| GO:0006412 | translation | biological_process |
| GO:0022627 | cytosolic small ribosomal subunit | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021612949.2 | False | 560 | mRNA | 0.44 | 4 | 53926018 | 53927959 |
| TU820345 | True | 361 | TUCP | 0.52 | 4 | 53926217 | 53927959 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110530118 | LOC106568961 | coding | upstream | 158862 | 53744528 ~ 53767156 (+) |
| LOC110530115 | LOC106568965 | coding | upstream | 246013 | 53674480 ~ 53680005 (+) |
| mrpl34 | mrpl34 | coding | upstream | 251915 | 53670348 ~ 53674103 (+) |
| LOC110530110 | LOC106569025 | coding | upstream | 470985 | 53452148 ~ 53455033 (+) |
| LOC110530108 | LOC106568973 | coding | upstream | 589965 | 53325588 ~ 53336053 (+) |
| LOC110530122 | LOC106568957 | coding | downstream | 27244 | 53955203 ~ 53962940 (+) |
| LOC110530127 | NA | coding | downstream | 217151 | 54145110 ~ 54155237 (+) |
| LOC110530128 | LOC106568951 | coding | downstream | 228149 | 54140181 ~ 54207822 (+) |
| LOC110530129 | LOC106568949 | coding | downstream | 283947 | 54211906 ~ 54270087 (+) |
| LOC110530130 | LOC106568950 | coding | downstream | 345237 | 54273196 ~ 54276106 (+) |
| G722083 | NA | non-coding | upstream | 378 | 53925362 ~ 53925640 (+) |
| G722098 | NA | non-coding | upstream | 20847 | 53904931 ~ 53905171 (+) |
| G722037 | NA | non-coding | upstream | 55278 | 53816405 ~ 53870740 (+) |
| G722046 | NA | non-coding | upstream | 96970 | 53828687 ~ 53829048 (+) |
| G722016 | NA | non-coding | upstream | 137732 | 53787430 ~ 53788286 (+) |
| G722120 | NA | non-coding | downstream | 20767 | 53948726 ~ 53949043 (+) |
| G722129 | NA | non-coding | downstream | 37148 | 53965107 ~ 53965395 (+) |
| G722146 | NA | non-coding | downstream | 65105 | 53993064 ~ 54003115 (+) |
| G722164 | NA | non-coding | downstream | 103582 | 54031541 ~ 54031901 (+) |
| G722176 | NA | non-coding | downstream | 129725 | 54057684 ~ 54062728 (+) |
| G721689 | LOC106583873 | other | upstream | 548313 | 53377232 ~ 53377705 (+) |
| LOC110530024 | LOC106568723 | other | upstream | 3284852 | 50607401 ~ 50641183 (+) |
| LOC110530019 | LOC106568718 | other | upstream | 3532182 | 50384296 ~ 50397007 (+) |
| LOC118965615 | NA | other | upstream | 4071826 | 49853027 ~ 49854435 (+) |
| LOC118965528 | LOC106568937 | other | downstream | 696215 | 54557953 ~ 54670115 (+) |
| LOC110530153 | LOC106568927 | other | downstream | 1206071 | 55120291 ~ 55136638 (+) |
| LOC110530939 | LOC106568914 | other | downstream | 1531737 | 55457870 ~ 55461071 (+) |
| si:ch211-267e7.3 | LOC106568906 | other | downstream | 1782281 | 55710156 ~ 55724271 (+) |
| G725573 | NA | other | downstream | 3055611 | 56983570 ~ 56984285 (+) |
