XLOC_025835


Basic Information

Item Value
gene id XLOC_025835
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58580589 ~ 58615939 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052825
CTTCAACTTTTCTAGTAGCAGACATTTTTACTCTCATTCCCGAAGACCATGGTGTTAGCTAAAGATGACTTTattgttctactgaagaaaaaacatCACTGCCCCAACACAAGCTTTGCTCATCTACTTGATTCATGGTAAGCAGCTCATTAGTAGAGAGAATATTAATGTGttcatatcataatattattgGATTTTTACACTCACAGAGCTTTTCTGCAGTTCCTCATAGCTGGTAACAGTCTCCTTCTGCCCTCTGAGTTGATTCTGTACTTTTTAAGATCAAATGTATCCATCACCTCCTCTGACATCAGGATCATGTTTGCCAGAGTTGAGCACTGAGCAAGAgtcagctttttaaaaatatttttagactttaaaaatCTCTGCATTTTTTCAACAATGGAATTATCCTTCATCTCAATCAAGCAGTGTGAGAGATTCATCCATCTTTCAGGACTGATGTTGTGTTTTTGTCCTCGTTTGAGGTTTTGGATTATTTTCTTGATGATCTCTGgtttgttctctgtgtgtttcagcagATCCTgtaagagtctctgattggactccagtgggACGCCATGAAGAAATCGCAGGAACAGATCCAGGTGTCCAGTTTTACTCTCCAGGGCTTTATTCATCACTCCTTTCAGAAACACATCCAGAGGAACTTTCTTACTCTGAGTTCTGTGTTTCCCTGTCAGGAACATCTTCATCACCTCAGTGTTGTTGTGTAAATAGCAGTAAAACACATACAGTGCTGCAAAACACTCCTGAAAGCTCAGATGAACAAAGCTGTAAACCTTCCTCTGATAAATCACAGATTCC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0001756 somitogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0060429 epithelium development biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0061053 somite development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052825 True 828 lncRNA 0.39 2 58580589 58615939

Neighbor

gene id symbol gene type direction distance location
XLOC_025833 si:ch211-165g14.1 coding upstream 92741 58472305 ~ 58487848 (+)
XLOC_025832 AL772300.1 coding upstream 110070 58469935 ~ 58470519 (+)
XLOC_025831 zgc:171489 coding upstream 111754 58455428 ~ 58468835 (+)
XLOC_025830 NA coding upstream 151465 58425000 ~ 58429124 (+)
XLOC_025829 sdr42e2 coding upstream 163621 58379450 ~ 58416968 (+)
XLOC_025837 NA coding downstream 38585 58654524 ~ 58680069 (+)
XLOC_025838 FP016018.4 coding downstream 39436 58655375 ~ 58659343 (+)
XLOC_025839 FP016018.1 coding downstream 40373 58656312 ~ 58656994 (+)
XLOC_025840 CU571382.4 coding downstream 48003 58663942 ~ 58665324 (+)
XLOC_025841 CU571382.1 coding downstream 52035 58667974 ~ 58669493 (+)
XLOC_025429 BX649540.1 misc upstream 28331553 30248739 ~ 30249036 (+)
XLOC_025827 AL772300.2 non-coding upstream 227002 58344862 ~ 58353587 (+)
XLOC_025826 NA non-coding upstream 274711 58300038 ~ 58305878 (+)
XLOC_025824 NA non-coding upstream 367903 58210375 ~ 58212686 (+)
XLOC_025842 CU571382.1 non-coding downstream 53635 58669574 ~ 58673206 (+)
XLOC_025843 NA non-coding downstream 66618 58682557 ~ 58682886 (+)
XLOC_025844 CU571382.5 non-coding downstream 78237 58694176 ~ 58695037 (+)

Expression


Co-expression Network