LOC110530133 (LOC106599022)


Basic Information

Item Value
gene id LOC110530133
gene name LOC106599022
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54356014 ~ 54375385 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612974.2
TCAGGTTGCTCAGCAAGCATAACAGTATTGATTGGTCCTCCAGTCTGCCAGTCATTGTCTAGCTCTACTATCACGCAAGTGACGCCCTAGTTTCTGCAGGTGCAACACTGGGTACTACTGCAACGGAGCTACAGATAAAACAGACAATTCACGATGGCCTCAGCAACAGCCACCTATGGACAGAAGGAGTCCTCCGACCAGAACTTCGACTACATGTTCAAGATCCTGATCATTGGCAACAGCAGTGTGGGTAAAACCTCCTTCCTGTTTCGCTATGCTGATGACTCCTTCACGCCGGCTTTCGTCAGCACGGTGGGCATCGACTTCAAGGTGAAGACCATCTACAGGAACGACAAAAGGATAAAGCTGCAGATCTGGGATACTGCCGGACAGGAGCGCTACAGGACCATCACCACGGCCTACTACAGAGGAGCCATGGGCTTCATCCTCATGTATGACATCACCAACGAGGACTCCTTCAACGCCGTGCAGGACTGGTCCACCCAGATCAAGACGTACTCCTGGGACAACGCCCAGGTCCTGCTGGTGGGAAACAAGTGTGACATGGAAGACGAGAGGGTGGTGGCAGCAGACAGGGGCCGGCAGCTCTCTGACCAACTTGGCTTTGAGTACTTTGAGTGCAGTGCCAAGGACAACATCAACGTCAAGCAGACGTTTGAGCGGCTGGTGGACATCATCTGTGAGAAGATGTCGGAGAGCTTAGACAACGCCGACCCCGCCGTCACAGGGGCCAAACAGGGGCCCCAGCTCACCGAGCAGCCCGAACGCCCCCACCAGGACTGTGCTTGCTAAACACCCACTACACACGTACCACACACACCTGACCCCTCACACACCCCTTCCTACAGCCTCCTCAGCTGGTGGAAGAGGTCTGTGATGGGTTTGTGTTTTAGATGGAAGAGCCTGGCTGAATACTCCGTTATTCCATATTTCAGTCCCCCGTCCATCCATAGGTGTTTAGAGTCCAAAGTTCACATTCTGACTCCCCTTACTGCGGCCTCGAACCTGAAGGGATTTCATGTATTTTTTTTGAAGGGCCACATTGCTGATGATCTGTTTACTGTTGAGagctttgttgtttttttcgATGTCCTCGATTAGCTGGTTAACAATCAAATCCATTTAAGTGGCGTGAGTGAGGTATGTTCTAAGTCCACATTTTGGATAACAAATGTTTTTACGAGATTTGTTTTTTCAAACATATCTGACCAAAATCCCATGCATATCGGTTATCAGTCATGGTCATTTCCTAATATTCTATCATTGCTGGATGTAAGAAAAAGAGAACTTGATGATGTGGTCCCTgtcccagtttttttttttttattgttatttttttaactcatcttttttttttttttagcaaaccTAGAAAAGTGTCTAAGTAGAAGAGTATATATAAATGTTCAACTTCGTAATATAATAAATATGCATTTTAGAATTCTAAAATATATAAACAAATGGTGTAAAATTACAATAATTTAAAGGTGTAAAAATATCTGTGCTTTGTGAGAGGTGcatgttgtattttattttttttttttttaccatggaACGTCTAAGAGCTGTTGGACACGTCCCGCTGAATCAAACTGGCTTGTTTGTTTCGCTGTTAGGGTCGTGTGAACAACAGTTGAAAATGTAGCTTCTTATTCCTTGTCAGTGTGCATCACTGCTATTCTACAGCACAATCGCCTCTAATTCATGTGTAtgacacgagcacacacacacacagtcaggacaACACTGGGCTACTGCACccatatactacaacactgaccaatGTTAACATCACATTCCAATCTCTTTCCCATAGTCCGTTTGACTTATTTatttttgggatttttttttttttttttttgcatgttcAATGTCATGTTTGTGTGATTTTGGTCTGTTTCAGTGTAGAGATAATTGCTTGTTGGTATATACATGAGGATAACGTAGTCAATGAAATGCACTCAGGCACATTAAGGTATTTGGTCAGTTATGTCACGACCATCTATATTTACACACAGTATTATGTCTTATTTTTTTAGATGCGCTCTATCACGGTTGGAAAAAATACTTATCAGtattgtgtgggggggggggggttgaattgGGTTGACATACTCCTGCCCGAAAACACTTACATTCCACTGTATGTTCTCCTGATTATGTACAAGCTGTTTCAAGGAACTGCTTTTACTTCCATTTTCCATGTTTCTAAGCCAACTGAACCTTTTAGGGTGGGTGTAGTACCAGTGTGAATACTGTATTACTCTCAGAGAAATACTGTGTCATTGGCCAGCCTGGTTCTCCAATATTAACTGCCAACAAACCTGCTAAAGGTCATGTCTGTTACAAATACTGTTTGTGTTTAGTCTTAAGGCAGCTTTGCTTTCATGTTTTTTCCAAAGACGTCCCAATTAGACTACCAAGCCAAAAATGACACCCACTAGGACAAGActtgtttgacatgtttttggAGCTGCACTGAGTAAAAGGCCTGTAGTACAAGAGAAGCATTTGGTATGTATGCCTACTCCCTGTGGCAGTTTCCAATAAGGGAGAAGTATAATCGgtacttttttatttaacttagcaagtcagttaagaaaaaatattatttacaacgatggcctactggggaaaagtgggttaactgcctttttcaggggcagaacgacagatttttaccttgtcagctcggggatttgattaCTAGCCCAGCTCGGGATTTGGTTACACGCCCAACGCTCTAGCCACTCGGCAACCTGCGCCCCTAATCACTTCCTATTAAACAACTTTAGTTTTCTTTGTTGATTTTGTGTTTTGCTGTAAACTTGCCTCTGACTTAGGTATGTGTCCAATTCAGCTTTCTTagctctcctcccttccttcatcttgtaaataagcatttttttGTTGGGTTTTAGTCTTGAATTGTGCTGTAATACTGTAACTCCAGGTTTGCTAAAACCAAGGAATTAATAAACAAAATATAAAAGCA

Function

NR:

description
ras-related protein Rab-3A-like

GO: NA

KEGG:

id description
K07882 RAB3A; Ras-related protein Rab-3A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612974.2 True 3016 mRNA 0.43 5 54356014 54375385

Neighbor

gene id symbol gene type direction distance location
pde4ca LOC106568947 coding upstream 8997 54287115 ~ 54347017 (+)
mpv17l2 LOC106568948 coding upstream 75516 54277913 ~ 54280498 (+)
LOC110530130 LOC106568950 coding upstream 79908 54273196 ~ 54276106 (+)
LOC110530129 LOC106568949 coding upstream 85927 54211906 ~ 54270087 (+)
LOC110530128 LOC106568951 coding upstream 148192 54140181 ~ 54207822 (+)
LOC110530136 pgpi coding downstream 10165 54385550 ~ 54392076 (+)
LOC110530135 LOC106568944 coding downstream 16953 54392338 ~ 54403343 (+)
LOC110530137 LOC106568943 coding downstream 32072 54407457 ~ 54442078 (+)
rb11a rb11a coding downstream 113549 54488934 ~ 54497967 (+)
LOC110530143 LOC106568938 coding downstream 151041 54526426 ~ 54556133 (+)
G722271 NA non-coding upstream 95915 54259383 ~ 54260099 (+)
G722176 NA non-coding upstream 293286 54057684 ~ 54062728 (+)
G722358 NA non-coding downstream 100302 54475687 ~ 54479545 (+)
G722334 NA non-coding downstream 129997 54505382 ~ 54507445 (+)
G722369 NA non-coding downstream 138943 54514328 ~ 54514544 (+)
G722370 NA non-coding downstream 140895 54516280 ~ 54516595 (+)
G723092 NA non-coding downstream 295975 54671360 ~ 54671582 (+)
rps28 NA other upstream 428055 53926018 ~ 53927959 (+)
mrpl34 mrpl34 other upstream 684155 53670348 ~ 53674103 (+)
G721689 LOC106583873 other upstream 978309 53377232 ~ 53377705 (+)
LOC110530024 LOC106568723 other upstream 3714848 50607401 ~ 50641183 (+)
LOC110530019 LOC106568718 other upstream 3962178 50384296 ~ 50397007 (+)
LOC118965528 LOC106568937 other downstream 248789 54557953 ~ 54670115 (+)
LOC110530153 LOC106568927 other downstream 758645 55120291 ~ 55136638 (+)
LOC110530939 LOC106568914 other downstream 1084311 55457870 ~ 55461071 (+)
si:ch211-267e7.3 LOC106568906 other downstream 1334855 55710156 ~ 55724271 (+)
G725573 NA other downstream 2608185 56983570 ~ 56984285 (+)

Expression


Co-expression Network