LOC110530143 (LOC106568938)


Basic Information

Item Value
gene id LOC110530143
gene name LOC106568938
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54526426 ~ 54556133 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612989.2
ATATGACCTATCGCCTCTCACTGCAGCGGTGAACAGTTGAGAAACGAAAGCTAGGGGGACTGTTGCAAAAAAGCGATTGATAGAAGCAAGAATACATAAAACAATCTTCCTTTTGAATTTCTCTTCTTTTGTAGTATAACGCTCTACAAATTCAAATAAGGTCTGTTCAAAGAGGGGATTGCTCGAAACGAAGATAAGGGTTTGTGTAGCACGCAAGTTGACTAGCTGTCTAGCTAACGTTGCTACGGCAAAACTGAATCACCGTTCTAACTGTTACTGATTTGATAATCGACGTCGCTGATTTATCGACGTGCGCAAGTCGTCTTCGAAATCGGGGTGGTCGACCGTTCGCCATCCAACCCTGTCTTCCCTCTTGACGCAGTCCGAAGAGTGTACTGGTTCAGAGAATGCTAAAGAATGAGTCAAAGGGATACCTTGGTTCATTTGTTTGCCGGAGGgTGTGGGGGCACAGTGGGTGCTATTCTGACTTGTCCGCTGGAAGTAGTGAAGACCAGACTCCAGTCCTCTCATGTCACCTTTTACATCTCTGAGGTGCAGCTCACCACCGTTAACGGGGCCAGTGTGGCCCGCATGGCCCCCCCGGGACCCTTGCACTGCCTCAAGTTGATACTGGAAAAGGAGGGACCCCGCTCGCTTTTCAGAGGGCTAGGGCCCAACCTGGTGGGTGTGGCTCCTTCCAGAGCCATCTACTTTGCAGCTTACTCCACTGCCAAGGAGAAGCTGAACGGTGTGTTCGAGGCTGACTCCACGCAAGTTCACATGGTGTCTGCAGGCCTAGCAGGGTTCACTGCTATCACTGCAACCAATCCCATCTGGCTGATAAAGACCCGGTTGCAACTGGATGCCAGGAACCGTGGCGAGCGGCGCATGAATGCCTTCGAGTGCATGCGGCGGGTCTACCAGACGGAGGGCTGGCGGGGCTTCTACCGCGGTATGTCTGCCTCGTACGCCGGCATCTCCGAGACAGTCATCCACTTTGTCATCTACGAGAGCATCAAGCGCAAGCTGATGGAGTCCAAGGCCCAGGCCAGCATGGATCAGGACGAGGATGAGTCGGTGAAAGACGCCTCAGATTTTGTGGGTATGATGCTGGCAGCCGCCACGTCCAAGACCTGCGCCACCTCCATCGCCTACCCCCACGAGGTGATCCGCACCCGGCTACGAGAGGAGGGCAGCAAGTACCGCTCCTTCTTCCAGACATTGCTGACAGTACCTAAGGAGGAGGGCTACCGCGCCCTGTACCGCGGTCTCACCACCCATCTGGTCCGCCAAATCCCCAACACTGCTATAATGATGTCCACCTACGAGATGGTGGTCTACCTGCTCCAACGCTAGCCCCTCCCCTTCCGGTGTGGAGAGGAAGTAGGAAGTGACTGACTTGGTTGGGGATATCTAAGATGGAGACCAAAGGAAAACTGATACTGACCAGAAccaagaagaaagaagaagagctCCCCCACTAATTCCCCACCAACAACCCCAACCCCCCTAAGCCTACCCCACAAGGGGGCGCTATGGTCTGGGATGATAGAGAAAGGATGGggtgggaagaagagagagggacggcGAGAGACCGTTGGGTCAGTCCTTTACAGAGCCTGTCAAACAGTCTCAAAGATAGACGGAAATCATTTTGTGGCCTTAAAGAGtttagtctgtctctctgtagaatGAAACTAATCTGCTTTAGCCTGTACGGAGATGACAATCTGAAAGGGGAATGCAAGAAAACAATCGGTTAAAAAAACAGGTGTCATAACAACACTATGAAAATTATAGAAAATGTTTATTGCAAAATGTTCCACCAGTAGTTCTATTTGATTAGATTAGCACTTTTCCCCTAGGATTCAGCATACAAGCCAGGGATGGGCAATTGGCGGCCCTTGGATCAACTTCCCcaaactcagtcggggtctcaacttactgttgcaagttagaatagcagaatgcacaaggtgcaatttcaaaatgcatcagcagtttctcttaTGTCAGTCAATGACAGTCAATTAGCCCATCCATGTCAGCGAAAAATGTTTTTGAATAGTAAGTTAGTCGAGCGGCTGGTGGGCCCGCATTGATTTTgctacatgctgaccacactgcttgcgttgcaaaataaatgtacacatacatgttattcaatcattgcacccacactgctcgcgcgcgccaacgagcatctgcgttgccaatcgctaaaatagaagtcagttctatttgtgacgctcaacGCGGTGCAAgttctgcctctcccatctcctcattggtttatagaagcagatacccacgtgccatctccttattggttatacccacgtgggtgattgaaagatgaactgaggtcggtcggtcgtggtaatactatgaaagttagatgccaattgctatataaagtccaaagaaggaAAAAGCCTGGAAAGAGGaaagatgactagaaacaattctgttgaccgttttatgtgtggattaattgcgcatcaggtaaaataacaactcaacatttatatcccaggacaaattagctagcaacagcaagctagctagctagctaaattgccataaatgtttaatgctttttgacctgtccccaaattaatataattggttgagtttgttttgttatttcaacctgcgtgtcgcgATCACATTTGGTGtaggggggacaaaatcaattgcGCACTCGCACGTCCGGTCTGGGCATGGTGCTAGTCTCTCAGTTTCACTCAGATAACATTTCTCTACACACCATGGCCAAATGTGTAGAATGACAGGAAATGGGGTGTAAAACAGCTCATTTtcctctccgccccatggcaagaTGATTAGAATGGCATGAGATAATTTATAAAGTTGCAAAAAAATGTACTCTAAAACTTAGTCTCTGTCAATAGGGGGGCTGCTAAAATGTTATGCTCCCACCCCCCATAAAAGTTGTCCATCCCTGATGCAAGCTAATGTTTGAAACAAGCTGTGCATGCTTTGTTTCAACAGCTTGAACCCAAGCTTGGTGTTTAAGGAATGTCAAACAAACATTGGCGAGGGAAGTTGTTTTTAAATGACAATTTTACGTTTTTACAACCATCTCTAAGTGGTACGCTATAGAAGGATCCAGACACTTGTTTTTGGctatttcacttgtttttgagaaacttacccccGGCCAGTGTCACTTCCTCAATGTCGCtgaaaaaaaacatgaacaaatgcTCCAAAAACATCCAAATACGTATTTTTCTTTCCAAACTTTATCTGCAACGTTATATTCCACTTTGCGGCGACTCGAGCTCCTTCCCCTATCCAGCTGTTTCATTCTTTGGTAGCCTGCTGCTAGAATGGACGGATAAGTATGGCTTGAGTCACAATAAAATGGAATATAACGTTATAGATAATGTTCGGAATgacaatttcatgtgtacaacatctaaagacctgcgTCACTATACTGAGAGCATTTACATTTCTAAAATGACGTATTTGGGTGTTTATGGAgcattttgttcatgttttttcagAGCCCCCGTACTGCACAATATGAATGAGGAAGTGACTCACTGGTTAGCCTAGAtttctcaaaaacaagtgaaatagCACAAAAAGTGTCTATCTTTCTATAACATGCCATtgtaaaaacaaaatatatatatatagagagatggttcttaaaaataaaaaaaaagatttagGCACCGTTTCTTTCTCCCCCCCAGATCATTTAAGATCTCTAGCTAGCTATATGATAAGAGAATAGCAAGCAAACATTTCACGTACTGCAACGAGTTTGTCTTCAAGCATTCCCCTGAAGGCCAGAGTTACCCCTTATAGTCTGAAGCAATGCATATGGTGCACAAGACTAGGGATCGCCGCTGATCACAACACATGCCACAGACGCTTATCCAGTGTTTTGTATAATGGTATTGTTTCTCTGATACTAGTCATTGGGAGGGACATGGTTGTCTCTCGTGAGTGCACAGGATTTCTTTGATCTGGATAGGGTGCGAGTCTTTCCAACAGGTACCAACACTTAGCTGGTTAGAGGTCTGTCTACCGGTGTGACGCCGCTACTTGAAGACAATTTGTTAAATGTTGGAAGTCAGGAAGTGTCAATGTCATTCCATCATCTCTCCCAACCTTTCGTGTGAGATTTGGATGGTGACTGTGGGTCGATGTGCATTtgactctgtgtttgtgtgtgtgtgtgtgaggtgaaaGCGAACTGCCCTGATATCTACTCCAGAGGTAGTGAGTGCCCTCCACTAAAAGTTAATCATGTAGATTACTGCGGTTGGGAGCAAGGCAAAGCAGTGAGCCACACCAGCTGCTACACAGTAGCCCTTCCCTACCAGTGGCTCCCAACTGAAGTTTTATACACTTTTTTTTGTGGCCTTTTGGGTTATGTGCTTAACATTTTCTTGTGTGGACATTTTAATCTTGTATTATCAGAATAGTATTACTGTATATGCAAAAACGGTGTTTTGCTCAGCAGTTCCCATTGCAGATACTGTACAGTTCAGAGTACTTCATCTTGTGAAGGATATTCATGTGTATATAATACATATGCATATCAACTATTGTGTGTATTTTGCTTAGGTCCAtgtgttattatactgtagtttataGTTGCAAATTATTTGTTTGATTGCATTTGTGTACAATTGTAAGATGTTTGAACCTGTTGCAACATGGTGTGTTGACATTATTTTTCTTTTTGTTCAAGTTTTATATtatacaatttgtatttcattttacaTCATGCAAGCCTTGGTGCTGAAAGACAGTCTTTGATTTTATGTCAAAGTATTATTTTTcagaattatatatatttttgtgtgtgtgtaaattccCCTCAATCTGATTTTTACATTTGAATTTGCTCTCCAGCCATCTTCAAGCGATAGTATCCTGTATATCTAACTGTGTAGGCTCCTGCATCCTATCTGGTCTTTGTTACAAATTCTCAATCTGGTATTTAGTAGGGGAAAAAAAACAGTGATGGAGCGTAATATAAATGACTATTATATTAATGTCAATATTATGACAAGGTGATGTTTTGGCGTTCAAGTCACCCTGAACTATTTGAAACTGATTCAGGCTCTGGATTCATGACTGAAGACCATCCGACAGTGCAGAGGCTACATTGGATTATGGTGCGCATCGTTTAGATGGTTGTAAATATCCTTCTGTACATTGAAGTTTTTACCCGAGGCCTCTGCCTATGGTAGTTGTTCATTTTGTCAGGCCAATTTCAAGTATTTTTTCCTATCCACTGGCATACTGTATAGAACTGTACTGTGGAGTCCTTTTCCCACAGACTATAGCCTAGCTGTTTTTGTTACTATCATTGCCCTGACAGTCATACTGTGACTTGAATAACTAGTATACAGTACATAACTGATGTATTTTGTAGTGGAGCGTAGACTTGCATATAATGTGATCTGTTAGACTTTAGTGACTGCCCCGTGCTGCTATCTAAGAGATGGGGCTCAATGCCACTACGCTTCCACTCCACTCAAGACGGCTCTGTTGTATTGAAAACAAAACACTACACAGACCAGCAGGTCTGCAGTTTCATGACTTGTCCCCACATAGTCTTGGGTTAGTAGGTTGGCAATACCTCAACCATGCCACTAAAGACTAATCCATTTAACACTGTGGATGCCATCATGGTGGGTCCCATATGGCTTCTCTATTGGCAAAAACCGGAGTCTGCCAGGGAGTATACAGATTTTATACAGCCAAGGTACAGTTTACACAGTTTGGAAAAGTAGGCGTACATTTCTATGGTACGGTACTGGAGAACTAGTAACTCAAGAATCTACTTCTCAGCTCTCTATCAATGTTATTTCGTAGTCAATAGGGGTCCAGGTTGACATGACTACCATGCTGCCCAATTGATATCTGGGCTAGAGAAATATGCTTACTCATTCATGTCCATGTTTTTGCCTGACTCAATACTTCAAGGAGAAATGTGATTACTATATGTAAAACATTTCAGTGAACTGATTTTTTTGGAATGCTGTTTTGTTGATTGTTTTCCCTCTTAAATCAGCCAGTACCCCCCTCCTATTTGTTTGGTTTAAGCTGGTGAAATTAATGTGGCCTATTCTTTGCCATCTATGTATCATCATACCTCCTTTTTGTACAAAAGTCAATAAAAACCAGATTGCAACTCCCA

Function

NR:

description
solute carrier family 25 member 36-A-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15116 SLC25A33_36, RIM2; solute carrier family 25, member 33/36

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612989.2 True 6196 mRNA 0.44 7 54526426 54556133

Neighbor

gene id symbol gene type direction distance location
rb11a rb11a coding upstream 28459 54488934 ~ 54497967 (+)
LOC110530137 LOC106568943 coding upstream 84348 54407457 ~ 54442078 (+)
LOC110530135 LOC106568944 coding upstream 123083 54392338 ~ 54403343 (+)
LOC110530136 pgpi coding upstream 134350 54385550 ~ 54392076 (+)
LOC110530133 LOC106599022 coding upstream 151041 54356014 ~ 54375385 (+)
LOC118965528 LOC106568937 coding downstream 1820 54557953 ~ 54670115 (+)
LOC110530145 LOC106568934 coding downstream 443729 54999862 ~ 55003924 (+)
LOC110530147 rbp2 coding downstream 451884 55008017 ~ 55010157 (+)
LOC110530146 LOC106569002 coding downstream 454772 55010905 ~ 55025208 (+)
LOC110530148 LOC106568930 coding downstream 482885 55039018 ~ 55062662 (+)
G722370 NA non-coding upstream 9831 54516280 ~ 54516595 (+)
G722369 NA non-coding upstream 11882 54514328 ~ 54514544 (+)
G722334 NA non-coding upstream 18981 54505382 ~ 54507445 (+)
G722358 NA non-coding upstream 46881 54475687 ~ 54479545 (+)
pde4ca LOC106568947 non-coding upstream 219012 54287115 ~ 54347017 (+)
G723092 NA non-coding downstream 115227 54671360 ~ 54671582 (+)
G723115 NA non-coding downstream 138919 54695052 ~ 54695285 (+)
G723112 NA non-coding downstream 142730 54698863 ~ 54701655 (+)
G723210 NA non-coding downstream 281635 54837768 ~ 54867601 (+)
G723294 NA non-coding downstream 445836 55001969 ~ 55002233 (+)
rps28 NA other upstream 598467 53926018 ~ 53927959 (+)
mrpl34 mrpl34 other upstream 854567 53670348 ~ 53674103 (+)
G721689 LOC106583873 other upstream 1148721 53377232 ~ 53377705 (+)
LOC110530024 LOC106568723 other upstream 3885260 50607401 ~ 50641183 (+)
LOC110530019 LOC106568718 other upstream 4132590 50384296 ~ 50397007 (+)
LOC110530153 LOC106568927 other downstream 577897 55120291 ~ 55136638 (+)
LOC110530939 LOC106568914 other downstream 903563 55457870 ~ 55461071 (+)
si:ch211-267e7.3 LOC106568906 other downstream 1154107 55710156 ~ 55724271 (+)
G725573 NA other downstream 2427437 56983570 ~ 56984285 (+)

Expression


Co-expression Network