LOC110530145 (LOC106568934)


Basic Information

Item Value
gene id LOC110530145
gene name LOC106568934
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54999862 ~ 55003924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612993.2
ATGTATGGCTCGTTTCGAATGCGCAGTTTGCGCAGATCAGCTGTGGTGGGAGGGAGTTTCCAattcttgtaaaaaaaaataagaagaaaGCTATTAAGTAATCGGATTAAAGGGATTCTGGTTCAAATAGGAGGCCTGGACAGCAGTCATGCATTCCGTCGCAAGTGAACAGCGATATCGGATCTCCTTTGCCCATTTCACCAGGAAGTAAGGAAACTAGAAACACAGCCAATATGCCAGTTGATCTGAATGGGTATTGGAAAATGATCTCAAATGACAACTTCGAGGAGTACTTAAAGGCCCTCGATGTAAATGTTGCCATTAGGAAAATTGCCACCTTGTTGAAGCCTGACAAAGACATCAATCAAGATGGTGACCACATAGTCATCAAGACCCTCAGTACCTTTAAGAACTACAACATGGATTTCCATGTTGGCAAGGAGTTTGAAGAGGATCTGTCAGGGGTGGATGACAGAAAATGCATGaccaCTATCTCATGGGAGGGAGACAATCTGGTGTGTGTgcagaagggagagaaagaaggaagaggCTGGACCCATTGGGTGGAGGGGGATGAGCTTCATCTGGAGCTGAGAGCTTGTGGAGCTGTGTGCAAGCAGGTCTTCAAGAAAACCTAAACCAGCACTGGAATTACAGAATGGCGCCCCCTACCTGAGCGCttaagagagacacagacacaaaccaACCCTGTGACAAAGAACCCTCTAAtacactcatccatccatccacccatccacccatccatccacccacccacccacccatccaaccatccatcctTCTATCCTTCATTCCATCAATCCTTTCACATTTCTTTCTGTCGATCACTTGTACTGTAACTCTGTCTCAGGGTGAGAGCCCCTTTGATTGACATGTTATAGATGTGTGGATACATTAACACTGAAGTACGTGTAGTAGGCTTTGTGATTAGTGCCTCAATCTCTAATGGTGTCCTGAGTTTACAACTGGGGGTGAACTTGACCAGTAGGAAGGAGGGTTTTAGTAGAGTGAAAAAGAAAATGAGGGTGAGAGAGGTAAAGAATGAAAATGAAATGGAGAGGCAGCAGAAGATGTGACAAATAGCTACCAGGCCTGTGCAGCTGAGACATCATCGCCGTCTTAGTAGAAAACTTAGTAGAAAACTTAGTAGAAAACAAGTACTAACGTGTTCAGGAAATAACAGCAGACTTTGTCTGTGTTTTTCCTCAATTCATTTGGGAGTGTCCCCTTGATAGGAAAAAATCACTCAATAAATGAATCTCAACAATGTG
>XM_036985701.1
ATGTATGGCTCGTTTCGAATGCGCAGTTTGCGCAGATCAGCTGTGGTGGGAGGGAGTTTCCAattcttgtaaaaaaaaataagaagaaaGCTATTAAGTAATCGGATTAAAGGGATTCTGGTTCAAATAGGAGGCCTGGACAGCAGTCATGCATTCCGTCGCAAGTGAACAGCGATATCGGATCTCCTTTGCCCATTTCACCAGGAAGTAAGGAAACTAGAAACACAGCCAATATGCCAGTTGATCTGAATGGGTATTGGAAAATGATCTCAAATGACAACTTCGAGGAGTACTTAAAGGCCCTCGATGTAAATGTTGCCATTAGGAAAATTGCCACCTTGTTGAAGCCTGACAAAGACATCAATCAAGATGGTGACCACATAGTCATCAAGACCCTCAGTACCTTTAAGAACTACAACATGGATTTCCATGTTGGCAAGGAGTTTGAAGAGGATCTGTCAGGGGTGGATGACAGAAAATGCATGaccaTTATCTCATGGGAGGGGACAatctggtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtttagaccaCTATCTCATGGGAGGGAGACAATCTGGTGTGTGTgcagaagggagagaaagaaggaagaggCTGGACCCATTGGGTGGAGGGGGATGAGCTTCATCTGGAGCTGAGAGCTTGTGGAGCTGTGTGCAAGCAGGTCTTCAAGAAAACCTAAACCAGCACTGGAATTACAGAATGGCGCCCCCTACCTGAGCGCttaagagagacacagacacaaaccaACCCTGTGACAAAGAACCCTCTAAtacactcatccatccatccacccatccacccatccatccacccacccacccacccatccaaccatccatcctTCTATCCTTCATTCCATCAATCCTTTCACATTTCTTTCTGTCGATCACTTGTACTGTAACTCTGTCTCAGGGTGAGAGCCCCTTTGATTGACATGTTATAGATGTGTGGATACATTAACACTGAAGTACGTGTAGTAGGCTTTGTGATTAGTGCCTCAATCTCTAATGGTGTCCTGAGTTTACAACTGGGGGTGAACTTGACCAGTAGGAAGGAGGGTTTTAGTAGAGTGAAAAAGAAAATGAGGGTGAGAGAGGTAAAGAATGAAAATGAAATGGAGAGGCAGCAGAAGATGTGACAAATAGCTACCAGGCCTGTGCAGCTGAGACATCATCGCCGTCTTAGTAGAAAACTTAGTAGAAAACTTAGTAGAAAACAAGTACTAACGTGTTCAGGAAATAACAGCAGACTTTGTCTGTGTTTTTCCTCAATTCATTTGGGAGTGTCCCCTTGATAGGAAAAAATCACTCAATAAATGAATCTCAACAATGTG

Function

NR:

description
retinol-binding protein 1-like isoform X1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612993.2 False 1292 mRNA 0.44 4 54999862 55003924
XM_036985701.1 True 1363 mRNA 0.44 4 54999862 55003924

Neighbor

gene id symbol gene type direction distance location
LOC118965528 LOC106568937 coding upstream 329747 54557953 ~ 54670115 (+)
LOC110530143 LOC106568938 coding upstream 443729 54526426 ~ 54556133 (+)
rb11a rb11a coding upstream 501895 54488934 ~ 54497967 (+)
LOC110530137 LOC106568943 coding upstream 557784 54407457 ~ 54442078 (+)
LOC110530135 LOC106568944 coding upstream 596519 54392338 ~ 54403343 (+)
LOC110530147 rbp2 coding downstream 4093 55008017 ~ 55010157 (+)
LOC110530146 LOC106569002 coding downstream 6981 55010905 ~ 55025208 (+)
LOC110530148 LOC106568930 coding downstream 35094 55039018 ~ 55062662 (+)
ap2m1 ap2m1 coding downstream 60806 55064730 ~ 55072215 (+)
LOC110530151 LOC106599070 coding downstream 98520 55102444 ~ 55106033 (+)
G723210 NA non-coding upstream 132261 54837768 ~ 54867601 (+)
G723112 NA non-coding upstream 298207 54698863 ~ 54701655 (+)
G723115 NA non-coding upstream 304577 54695052 ~ 54695285 (+)
G723092 NA non-coding upstream 328280 54671360 ~ 54671582 (+)
G722370 NA non-coding upstream 483267 54516280 ~ 54516595 (+)
G723525 NA non-coding downstream 26230 55030154 ~ 55030524 (+)
G723543 NA non-coding downstream 69905 55073829 ~ 55074170 (+)
G723539 NA non-coding downstream 82047 55085971 ~ 55101530 (+)
G723563 NA non-coding downstream 104687 55108611 ~ 55108957 (+)
G723601 NA non-coding downstream 177192 55181116 ~ 55181330 (+)
rps28 NA other upstream 1071903 53926018 ~ 53927959 (+)
mrpl34 mrpl34 other upstream 1328003 53670348 ~ 53674103 (+)
G721689 LOC106583873 other upstream 1622157 53377232 ~ 53377705 (+)
LOC110530024 LOC106568723 other upstream 4358696 50607401 ~ 50641183 (+)
LOC110530153 LOC106568927 other downstream 130106 55120291 ~ 55136638 (+)
LOC110530939 LOC106568914 other downstream 455772 55457870 ~ 55461071 (+)
si:ch211-267e7.3 LOC106568906 other downstream 706316 55710156 ~ 55724271 (+)
G725573 NA other downstream 1979646 56983570 ~ 56984285 (+)
LOC110530213 LOC106568871 other downstream 2464948 57421244 ~ 57478855 (+)

Expression


Co-expression Network