LOC110530147 (rbp2)


Basic Information

Item Value
gene id LOC110530147
gene name rbp2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55008017 ~ 55010157 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612997.2
GGACACCGTGTACCTTCCCATTCTGATTCAGCCCAAAGTTCACCAGCCCACAGAACCAACATGCCTGTAGACTTCAATGGCAAATGGGAGTTGGAGAGCAGTGAGAACTTTGAGGATTACATGAAAGCACTGAacATTGACTTTGCCACACGCAAAATCGCAGTGCAGCTGGCCCAGACCAAAGTGATCACCCAGGATGGAGACAAGTTTGAAGTCAAGACGCTGAGCACCTTCAGGAACTATGAGCTGATGTTCACTGTGGGGGTGGAGTTTGTGGAGCACACCAAAGGACTGGACAACAGGGTGGTCAAGGCTCTTGTGGTGAGGGAGGGGGACAAACTAGTGTGTACCCAGAAGGGGGAAAAGGACAACCGTGGGTGGAAGCACTGGATCGAAGGAGACAAACTGTACCTGGAACTGACGTGTGAGGACAAAGTCTGCAGGCAGGTGTTCAAGAGAAAAGAATAGAAAGACAATATCTGGATATCAGTTGCTGGATTCATCCACTTTTTCATACCTTGTGTCAATATAGTAAACTCCTGCTGTTACCATTTAAACTTGTCATACGGTTTCAAACTCACAAGCAAACCTGAATAAAGCATTGTATATTGTTCACTCTTCTAA
>XM_036985702.1
GGACACCGTGTACCTTCCCATTCTGATTCAGCCCAAAGTTCACCAGCCCACAGAACCAACATGCCTGTAGACTTCAATGGCAAATGGGAGTTGGAGAGCAGTGAGAACTTTGAGGATTACATGAAAGCACTGAacATTGACTTTGCCACACGCAAAATCGCAGTGCAGCTGGCCCAGACCAAAGTGATCACCCAGGATGGAGACAAGTTTGAAGTCAAGACGCTGAGCACCTTCAGGAACTATGAGCTGATGTTCACTGTGGGGGTGGAGTTTGTGGAGCACACCAAAGGACTGGACAACAGGGTGGTCAAGGCTCTTGTGGTGAGGGAGGGGGACAAACTAGTGTGTACCCAGAAGGGGGAAAAGGACAACCGTGGGTGGAAGCACTGGATCGAAGGAGACAAACTGTACCTGTTCCAGTCTACTTAAGGGGTGGCTCCTCCATACGCACCAATGCGATAGCAGTTCTACTTAGTTCATTCTCCATGCTACCAACCAGAAAAAAAGGAGCCTATGAAATGTCTCACTTTCTCTATCATCTCTGGTAGCATATCAATGGTCCTTTCCTTAATTTGCACTGATCGACCAGGACTAACCTGTTTCTTCAAAGGGAATGAGATAAGGCGAGGAATATGGCACCCCAAGCTCCTAATCCCAAACTTGATATCTGACATCAGACTGAGATCTGACCTCAGATTTGTTCTCTCTGAATTCACAGGAACTGACGTGTGAGGACAAAGTCTGCAGGCAGGTGTTCAAGAGAAAAGAATAGAAAGACAATATCTGGATATCAGTTGCTGGATTCATCCACTTTTTCATACCTTGTGTCAATATAGTAAACTCCTGCTGTTACCATTTAAACTTGTCATACGGTTTCAAACTCACAAGCAAACCTGAATAAAGCATTGTATATTGTTCACTCTTCTAA
>XR_002474485.2
GGACACCGTGTACCTTCCCATTCTGATTCAGCCCAAAGTTCACCAGCCCACAGAACCAACATGCCTGTAGACTTCAATGGCAAATGGGAGTTGGAGAGCAGTGAGAACTTTGAGGATTACATGAAAGCACTGAacATTGACTTTGCCACACGCAAAATCGCAGTGCAGCTGGCCCAGACCAAAGTGATCACCCAGGATGGAGACAAGTTTGAAGTCAAGACGCTGAGCACCTTCAGGAACTATGAGCTGATGTTCACTGTGGGGGTGGAGTTTGTGGAGCACACCAAAGGACTGGACAACAGGGTGGTCAAGGTTGGACACGTGGGCTGTGTTCGAATACTGTTACAACGCATCCTTCTTGCTCTCTTTTTGGGATGTACATGTCATCACTGCTGATCGCACGTGATTAACTAGGTGCTCTTGTGGTGAGGGAGGGGGACAAACTAGTGTGTACCCAGAAGGGGGAAAAGGACAACCGTGGGTGGAAGCACTGGATCGAAGGAGACAAACTGTACCTGGAACTGACGTGTGAGGACAAAGTCTGCAGGCAGGTGTTCAAGAGAAAAGAATAGAAAGACAATATCTGGATATCAGTTGCTGGATTCATCCACTTTTTCATACCTTGTGTCAATATAGTAAACTCCTGCTGTTACCATTTAAACTTGTCATACGGTTTCAAACTCACAAGCAAACCTGAATAAAGCATTGTATATTGTTCACTCTTCTAA

Function

symbol description
rbp2 Predicted to enable retinoid binding activity. Predicted to be involved in epidermis development and vitamin A metabolic process. Predicted to be located in cytosol.

NR:

description
retinol-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612997.2 False 624 mRNA 0.47 4 55008017 55010157
XM_036985702.1 False 928 mRNA 0.46 4 55008017 55010157
XR_002474485.2 True 728 mRNA 0.47 4 55008017 55010157

Neighbor

gene id symbol gene type direction distance location
LOC110530145 LOC106568934 coding upstream 4093 54999862 ~ 55003924 (+)
LOC118965528 LOC106568937 coding upstream 337902 54557953 ~ 54670115 (+)
LOC110530143 LOC106568938 coding upstream 451884 54526426 ~ 54556133 (+)
rb11a rb11a coding upstream 510050 54488934 ~ 54497967 (+)
LOC110530137 LOC106568943 coding upstream 565939 54407457 ~ 54442078 (+)
LOC110530146 LOC106569002 coding downstream 748 55010905 ~ 55025208 (+)
LOC110530148 LOC106568930 coding downstream 28861 55039018 ~ 55062662 (+)
ap2m1 ap2m1 coding downstream 54573 55064730 ~ 55072215 (+)
LOC110530151 LOC106599070 coding downstream 92287 55102444 ~ 55106033 (+)
LOC110530153 LOC106568927 coding downstream 110134 55120291 ~ 55136638 (+)
G723294 NA non-coding upstream 5784 55001969 ~ 55002233 (+)
G723210 NA non-coding upstream 140416 54837768 ~ 54867601 (+)
G723112 NA non-coding upstream 306362 54698863 ~ 54701655 (+)
G723115 NA non-coding upstream 312732 54695052 ~ 54695285 (+)
G723092 NA non-coding upstream 336435 54671360 ~ 54671582 (+)
G723525 NA non-coding downstream 19997 55030154 ~ 55030524 (+)
G723543 NA non-coding downstream 63672 55073829 ~ 55074170 (+)
G723539 NA non-coding downstream 75814 55085971 ~ 55101530 (+)
G723563 NA non-coding downstream 98454 55108611 ~ 55108957 (+)
G723601 NA non-coding downstream 170959 55181116 ~ 55181330 (+)
rps28 NA other upstream 1080058 53926018 ~ 53927959 (+)
mrpl34 mrpl34 other upstream 1336158 53670348 ~ 53674103 (+)
G721689 LOC106583873 other upstream 1630312 53377232 ~ 53377705 (+)
LOC110530024 LOC106568723 other upstream 4366851 50607401 ~ 50641183 (+)
LOC110530939 LOC106568914 other downstream 449539 55457870 ~ 55461071 (+)
si:ch211-267e7.3 LOC106568906 other downstream 700083 55710156 ~ 55724271 (+)
G725573 NA other downstream 1973413 56983570 ~ 56984285 (+)
LOC110530213 LOC106568871 other downstream 2458715 57421244 ~ 57478855 (+)

Expression


Co-expression Network