LOC110530146 (LOC106569002)


Basic Information

Item Value
gene id LOC110530146
gene name LOC106569002
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55010905 ~ 55025208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612996.2
AAATGAACCTCCAAAATGGCACGTCATCATTTCACATCGCACGCCGTTTCAGGAAGTTCCACGTCACTCGATAGTCCGTCCACAGAAAACGCAACACCGACTGGAACTATTCATAATTAATTCACATAAAAAGAGACAACCCACTGATAAAACATGCCTCTCAGGCTGGACATCAAGCGGAAGCTGACAGCCCGGTCAGACCGGGTGAAGAGTGTGGACCTCCACCCGACCGAGCCGTGGATGCTGGCCAGCCTGTACAATGGTAGTGTCTGCGTCTGGAACCACgaaacacagACCTTGGTGAAGACCTTTGAAGTGTGTGACCTTCCAGTGAGAGCATCAAAGTTTGTAGCCAGGAAGAACTGGGTCATAACAGGAGCCGATGACATGCAGATCCGTGTGTTCAACTACAACACCCTGGAGAGGGTTCACATGTTTGAGGCCCACTCTGACTACATCCGTTGTATTGCCGTGCATCCCACCCAGCCCTACATCCTCACAAGCAGTGatgaCATGCTGATTAAGCTGTGGGACTGGGAGAAGAAGTGGTCTTGCAGCCAGGTGTTCGAGGGCCACACCCACTACGTCATGCAGATCGTCATCAACCCTAAAGACAACAACCAATTTGCCAGCGCTTCTCTGGACAGAACCATCAAGGTTTGGCAGTTAGGCTCCTCTGCTCCTAACTTCACCCTTGAGGGCCATGAGAAAGGTGTCAACTGCATTGACTACTACAGTGGAGGGGACAAGCCCTACCTTATATCAGGAGCTGATGACCGCCTGGTCAAGATCTGGGACTACCAGAACAAGACGTGTGTGCAGACCCTGGAGGGACACGCCCAGAATGTGTCGTGTGTCAGCTTTCACCCAGAGCTGCCCATCATCATCACAGGCTCAGAGGACGGCACTGTGCGCATCTGGCACTCGAGTACGTACCGTCTGGAGAGCACGCTGAACTACGGCATGGAgcgcgtgtggtgtgtgtgtggcctgcGAGGCTCCAACAACGTGGCCCTGGGTTACGACGAAGGCAGCATCATCATCAAGCTGGGGCGTGAGGAGCCAGCCATGTCCATGGACACCAATGGGAAGATCATCTGGGCCAAGCACTCAGAGGTGCAGCAGGCCAACCTGAAGGCCATGGGTGACACGGAGATCAAGGACGGAGAGAGGCTGGCGCTGGCCGTCAaagacatgggcagctgtgagatCTACCCCCAGACCATTCAGCACAACCCCAACGGAAGgtttgttgtggtgtgtGGAGACGGAGAGTACATCATCTACACTGCCATGGCACTGAGGAACAAGAGCTTCGGCTCAGCCCAGGAGTTTGTCTGGGCACATGACTCCTCTGAGTATGCCATCAGAGAAAGCAACAGTGTGGTCAAAATCTTCAAGAACTTCAAAGAGAAGAAGTCTTTCAAGCCAGACTTTGGGGCTGAAGgtatcTATGGAGGCTTCTTGCTGGGCGTCAGGTCAGTGAACGGTCTGGCCTTCTATGACTGGGAGAACACAGAGCTGGTCCGCCGCATTGAGATCCAGCCCAAACATATCTTCTGGTCAGACTCAGGGGAGTTGGTGTGTATAGCCACAGAGGAGTCCTTCTTCATCCTGCGCTACCTGTCCGAGAAAGTAGCCGCCTCACAAGAGAACAACGAGGGAGTGACGGAGGACGGCATCGAAGACGCCTTTGAGGTCCAGGGGGAGATCCAGGAAGTGGTGAAGACAGGTCTGTGGGTGGGAGACTGCTTCatctacaccagctctgtcaacaGACTCAACTACTTTGTGGGGGGAGAGATTGTCACCATCGCTCACCTGGACAGAACCATGTACCTGCTGGGCTACATCCCCAAGGACGACCGCCTGTACCTGGGCGACAAAGAGCTGAACATCGTCAGCTACTCCCTGCTGGTGTCTGTGCTGGAGTACCAGACAGCTGTGATGCGCAGGGACTTTGGCATGGCCGACAAAGTGTTGCCCACCATCCCCAAGGAACAGAGGACCCGTGTGGCCCACTTCCTGGAGAAACAGGGCTTCAAGCAGCAGGCTCTGGCCGTGTCGTCAGACTCTGAGCACAGGTTTGAGCTGGCCCTGCAGCTTGGGGAGTTGAAGATCGCCTATCAGCTGGCTGTGGAGGCAGAGTCGGAGCagaagtggaagcagctggcagaGCTGGCCATCAGTAAGTGCCAGTTTAGCCTGGCCCAGGAGTGCCTCCATCATGCCCAGGACTACGGCGGCCTGCTGCTGCTCGCCACGGCCTCGGGCAACGCTGCCATGGTGGGCAAGCTGGCCGAGGGCGCTGAGCGGGACGGCAAGAACAACGTGGCCTTCATGACTTATTTCCTGCAGGGGAAACTGGACCACTGTCTGGAGCTGCTGATCCGGACCAACCGGCTGCCCGAGGCAGCCTTCCTGGCCCGCACCTACCTGCCCAGCCAGGTGTCCAGGGTGGTCAAGCTGTGGAGGGAGAGCCTGGCCAAGGTCAACCAGAAGGCGGCCGAGTCGCTGGCCGACCCCACCGAGTATGAGAACCTGTTCCCCGGTCTGAAGGAGTCGTTTGTGGCCGAGCAGTTCCTCCGGGAGACCTGCCTGGGCAACTCCCGGCCAGCCACCGACTACCCTCTGGTCACACCCAATGAAGAACGTAATATACTAGAGGATGCCACGGGCTACGAGCCCAAAGGAGTTCCCCTCTCACTTGCCACACTGGTACCAGGTGAAGACTGCAGGGAAGAGATCACGTTGGCTGCTGGAGTGCTGGCATCCGTGTTGACGCCCTCCGCGATCCCCTCGGAGACGGAGCCAGAGCCTGAGGCTGCACCTGAAGAGGAAGAGGGGGCGAGCCCCGGTTCATCTGAGGCACGGAAGAACAAGGCCCTGGACGAACTTGAAGATGACCTGGACAACTTGGAGCTGGACGACATCGACACCACGGACATTAACCTGGACACCACAGACATTAACCTGGAAGATGACTTCTTAGATGACTGAGAACCCCCCCCCGCTATGAATTTATTTAAGAGACCAAACCCCCTTTTTGTATTTGTACTTAACATGTGTTTTGTTAGTCCTACGGTGTTTGGAAGACTGAGTAGATGAGAAATCCATGCGAGGGGAAAGAGGCAAGTTATACTTCTTGATTCTTAAGCAGATTTTACACTTCATCCAGGGCCTTACCTTCACTAACTATCCATGCATTGAGCTATATATTTACTCTCTGTATGTGTACAATGATAAATCACTGTTCATTTACGCATAATAAATTGCTATTGCTGTACATTTGAA

Function

NR:

description
coatomer subunit beta'-like

GO: NA

KEGG:

id description
K17302 COPB2, SEC27; coatomer subunit beta'

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612996.2 True 3294 mRNA 0.55 21 55010905 55025208

Neighbor

gene id symbol gene type direction distance location
LOC110530147 rbp2 coding upstream 748 55008017 ~ 55010157 (+)
LOC110530145 LOC106568934 coding upstream 6981 54999862 ~ 55003924 (+)
LOC118965528 LOC106568937 coding upstream 340790 54557953 ~ 54670115 (+)
LOC110530143 LOC106568938 coding upstream 454772 54526426 ~ 54556133 (+)
rb11a rb11a coding upstream 512938 54488934 ~ 54497967 (+)
LOC110530148 LOC106568930 coding downstream 13810 55039018 ~ 55062662 (+)
ap2m1 ap2m1 coding downstream 39522 55064730 ~ 55072215 (+)
LOC110530151 LOC106599070 coding downstream 77236 55102444 ~ 55106033 (+)
LOC110530153 LOC106568927 coding downstream 95083 55120291 ~ 55136638 (+)
otol1a LOC106569022 coding downstream 159219 55184427 ~ 55190256 (+)
G723294 NA non-coding upstream 8672 55001969 ~ 55002233 (+)
G723210 NA non-coding upstream 143304 54837768 ~ 54867601 (+)
G723112 NA non-coding upstream 309250 54698863 ~ 54701655 (+)
G723115 NA non-coding upstream 315620 54695052 ~ 54695285 (+)
G723092 NA non-coding upstream 339323 54671360 ~ 54671582 (+)
G723525 NA non-coding downstream 4946 55030154 ~ 55030524 (+)
G723543 NA non-coding downstream 48621 55073829 ~ 55074170 (+)
G723539 NA non-coding downstream 60763 55085971 ~ 55101530 (+)
G723563 NA non-coding downstream 83403 55108611 ~ 55108957 (+)
G723601 NA non-coding downstream 155908 55181116 ~ 55181330 (+)
rps28 NA other upstream 1082946 53926018 ~ 53927959 (+)
mrpl34 mrpl34 other upstream 1339046 53670348 ~ 53674103 (+)
G721689 LOC106583873 other upstream 1633200 53377232 ~ 53377705 (+)
LOC110530024 LOC106568723 other upstream 4369739 50607401 ~ 50641183 (+)
LOC110530939 LOC106568914 other downstream 434488 55457870 ~ 55461071 (+)
si:ch211-267e7.3 LOC106568906 other downstream 685032 55710156 ~ 55724271 (+)
G725573 NA other downstream 1958362 56983570 ~ 56984285 (+)
LOC110530213 LOC106568871 other downstream 2443664 57421244 ~ 57478855 (+)

Expression


Co-expression Network