LOC110530148 (LOC106568930)


Basic Information

Item Value
gene id LOC110530148
gene name LOC106568930
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55039018 ~ 55062662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985703.1
tctccgatAGAGGGAGAACTTTTGGGTTTGGGTTGGTGTTTGTTTTTGTAGACTGCATTCTGAACTCGGGAGGAAGGATTCTTCGTGTGTATTCAACAAAATAACTGCAAGCTAGCTCGAAAAACGACTGCGTAAATTCACATTTAGCCAAGATTTGAAAGTAGTTACACGCATTTGGCTCCTTTTCAAATTGGTAAAAAATAATATCAGGGTACATAGCTAATCAGTCGTCGTCTGGCTGGACCTTTGTGGAGCAAGGTGCTTctgaatagctagctagctaacaggatTCAAAAGAACAACTGGAAGCTAGCTTGCTGGCTAGCCAGAAAGCCGGGGGAATCAGCACCACGGGGAGCCGGGGCCCGAGAGGGAGCCATCCAGGCCCGCGGCTTGATGTACCCTGCCTGCCTCGCCCCAGCAGCCCACAATGGGGGAGACCAAAGTCATATATCACCTCGACGACCAGGAAACACCCTACCTGGTCAAATTGGCAGTGCCCGCTGACAGGGTCACACTTGCGGacttcaaaaatgttttgaagaAACCCAACTACAAGTTCTTCTTCAAATCTATGGATGACGATTTTGGGGTAGTGAAAGAAGAGATATCTGATGACAATGCCAAACTACCTTGTTTTAATGGCCGTGTGGTATCTTGGCTGGTGTCGGGGGACGGTGCTCACTCAGATGGTGGCTCTGTGGTCGAGAGTTTGTCCGAGTTGCCGCCACCCCCCCTGGAGAGGACTGGGGGCATCGGGGAGTCCAGACCCCCCTCTTATCAGTCAGTTCTCTCTagCGGGAAGGCCACAGGTGGACGAGACTCGTTGGACAACGAGACGGAGACGGGCTCGATGGTGTCCCAGAGAAGAGCGAGGGAGCGACCGCGCCGGAAACACACTCGCGAGCATGGTGGGAGGAATGGCTACTCGAGGGTGGGCCGAGGGGCGGAGCTGGGCCAATACGACAGCTGCTCGTCCTTCATGAGCAGCGAGCTGGAGTCCACCAGCTGCTTCGACTCTGAGGATGACGACGCCACCAGCCGGTTCAGCAGTTCCACGGAACAGAGCTCCTCTCGCCTTATGAGGCGACACCGCCGGCGCCGCCGGAAACCCAAGACATCCAACATGGAAAGGTCGTCATCATTCAGCAGCGTCACAGACTCCACCATGTCACTAAACATCATCACTGTCACTCTGAACATGGAGAAGTATAACTTCCTGGGCATCAGCATCGTGGGGCAGAGCAACGAGAGGGGCGACGGGGGCATCTACATCGGCTCCATCATGAAGGGAGGGGCGGTGGCTGCAGACGGCCGCATTGAGCCTGGAGACATGCTACTGCAGGTGAACGACATCAACTTTGAGAACATGAACAACGACGACGCGGTTCGAGTGCTGAGAGACATCGTACACAAGCCAGGCCCCATCACTCTGACTGTGGCTAAGTGCTGGGACCCTAACCCTCGGAGCTGCTTTGCTCTGCCAAGAAGTGAGCCAATCCGGCCCATTGACCCTGCTGCCTGGGTGTCCCACACTGCGGCGATGACGGGGGTGTACCCTGCTTATGGCATGAGCCCATCGATGAGCACGGTCACCTCCACCAGCTCCTCCATCGGCAGCTCCGTCCCCGAGACCGAACGCTTCGACGATTTCCACCTGTCCATCCACAGTGACATGTCAACTGTCGCCAAGGCCATGGCTTCCCCGGAGTCGGGCCTGGAGGTGCGAGACAGGATGTGGCTGAAGATCACCATCGCCAACGCCTTCATAGGCTCAGATGTGGTGGACTGGCTCTTTCATCACATGGAGGGATTCTCGGACCGACGGGAGGCAAGGAAGTACGCCAGTAACCTGCTCAAGGCCGGCTACATCCGCCACACCGTCAACAAGATCACCTTCTCTGAGCAATGCTACTACACCTTCGGAGACCTCTGTGGCAacatgaCCCACCTCTCTCTGCACGACCATGATGGCTCCAGCGGCGGGGCGTCGGACCAGGACACCCTGCCCCCTCTGCCCCACCCTGGGGCTGCCCCCTGGCCCATGTCCCTGCCCTACCAGTTTTCCATCGCCCAGCCCTACAACCCCCAGCCCCAACACGACCTGCCACAGGGCTTCCCAGGAGTAGGGGCGGGCAGTGCTGGCAGCCAACACAGCGAAGGGAGCAGCGGCTCCAACTGCAGTAAGACCGAGGGCCGAGGCGGTGCCGGGGGCTCCAACAAGTCGGGTGGGAGTGGCAGCGAATCAGAGATCAGGAGCCATCGGGTCCCCAGCGAGCGCTCTGCGGCCCCTAGCGAGCGCAGCATCCGCAGTTCCTACAGCCATCGAAGCGCACACTCGTCCCACTCACTGGCCTACAGCCCTGGCTTGGTCTACGGCCCCCCAGGCCTGCCTCCTAACCCCCCCCACCTGGCCACAGCTGCTCCAGGAGCCCCACCAGGCCGACAGCTGGCCAACGCTCCCCCAGAGCTCACCGGCTCCCGCCAGTCCCTGCGCATGGCCGTAGGCAACCGCGGCGAGTTCTTTGTCGACGTCATGTGACGCAGGTTATGTCATAGGCGCACCACATAATGGTGGTTAGGGATTTTTTTGTTTAGTGctgagggggacagacaggaggaGGAAGTCTCTAGAAAATCACAGTTGGGGTCAAtgtcatttccttttgaattgccagaattgaaatggaattgagcccaaccctgctGGAAATGTCCTCTTGCTCTTGTGCTCCTGAGGGTGTATCTGATTCGCTATACTTTCTTCAGTGAAGAACCCCCACCCTCGCAGATGGAATCAAAGCGCCTTTTCTCAGTTTCCTCCCTGTGAGACGAGTTTTGCTTGGGTcgtgacagggagggaggccaGGGGAACAGCTGGGGATGACTTGGCGCTTTTCTACGTGGATGTTTTTCATTTGTTCTTTTCTCCAGCTCCACGTCCTGTCCTCCCCAACCTTAGTCCGCCAgagacaaagtaaaaaaaaaaatacaaaaaactcCTCTCTCCATACATCCTTTCACCTAAAATTTGAAAATGAACACTAACCTTTGAACCTTACATGtgcttttgtttgtttgtatgactatgaaaaaaaatgaaaagttaAATAATGTAGTGCAAAAGAATTGAGGCCCTTTCTGTTCTTATGTTTTTATCATAGCTGGTCGCCGATACATGTAGTTTATTTTTCAACACTTAACATGAGCTTCCAGCTTAGACTGATTTTAAAAGTACATTTTCGTCTTAAGTTTTCTTACCAACTCTTTCACACTactccagtgtttcccaaactcggtcctgggggcCCCGAAGGGTGCACAATTAGCTTTTTGCCCTAGCAGTAcatagctgattcaaataatcaatgtATCATggagctttgatcatttgaatcagcagTGTAGTGCTACGGCAAAACAAAAAACACTGCACCACTTGGGGGTCCCCAGGAtttgagtttgggaaacactgcactactcttgagaaaatgtatttttatttataaatATAGTTTTATGACTTTAAGTTGgttgttgtgtttttgtgtgtgtgtgtgcgcgcaagaAACCTGGAGTTTTCCAGGTGGGCGTAGGGACATTATTTGCACAAGCAAGGAATTTCAGTCTAGGAAGGAATGTGAAGGCAATATAGCTTGCAGATGTGTGCGAAGGCTTGACCTGACCATGTCTATTATTTTTTTGTATGTTCAAGCTTCCTTTGAACTGGGTGACCTGCTGTATCATCAAAAAGTTTCCAAATGTAGAGCTCTAGATTTGAGGACACTTTTTTTATGAGGGGAATATGATATGAGAGCATAACTTGAAGTATTTTGAGATTAATTTGGTAGGTGTGCATCATACATGAATCTGATGTGGAATTCCTACATTATGTAGGGATACAATTGAATGTGCAGGAAATGAAATATTTGTTGATATCCTGCTGCAGTAGGCAAAAATAAATGACCAATGTGCTTA
>XM_036985704.1
tccgatAGAGGGAGAACTTTTGGGTTTGGGTTGGTGTTTGTTTTTGTAGACTGCATTCTGAACTCGGGAGGAAGGATTCTTCGTGTGTATTCAACAAAATAACTGCAAGCTAGCTCGAAAAACGACTGCGTAAATTCACATTTAGCCAAGATTTGAAAGTAGTTACACGCATTTGGCTCCTTTTCAAATTGGTAAAAAATAATATCAGGGTACATAGCTAATCAGTCGTCGTCTGGCTGGACCTTTGTGGAGCAAGGTGCTTctgaatagctagctagctaacaggatTCAAAAGAACAACTGGAAGCTAGCTTGCTGGCTAGCCAGAAAGCCGGGGGAATCAGCACCACGGGGAGCCGGGGCCCGAGAGGGAGCCATCCAGGCCCGCGGCTTGATGTACCCTGCCTGCCTCGCCCCAGCAGCCCACAATGGGGGAGACCAAAGTCATATATCACCTCGACGACCAGGAAACACCCTACCTGGTCAAATTGGCAGTGCCCGCTGACAGGGTCACACTTGCGGacttcaaaaatgttttgaagaAACCCAACTACAAGTTCTTCTTCAAATCTATGGATGACGATTTTGGGGTAGTGAAAGAAGAGATATCTGATGACAATGCCAAACTACCTTGTTTTAATGGCCGTGTGGTATCTTGGCTGGTGTCGGGGGACGGTGCTCACTCAGATGGTGGCTCTGTGGTCGAGAGTTTGTCCGAGTTGCCGCCACCCCCCCTGGAGAGGACTGGGGGCATCGGGGAGTCCAGACCCCCCTCTTATCACGGGAAGGCCACAGGTGGACGAGACTCGTTGGACAACGAGACGGAGACGGGCTCGATGGTGTCCCAGAGAAGAGCGAGGGAGCGACCGCGCCGGAAACACACTCGCGAGCATGGTGGGAGGAATGGCTACTCGAGGGTGGGCCGAGGGGCGGAGCTGGGCCAATACGACAGCTGCTCGTCCTTCATGAGCAGCGAGCTGGAGTCCACCAGCTGCTTCGACTCTGAGGATGACGACGCCACCAGCCGGTTCAGCAGTTCCACGGAACAGAGCTCCTCTCGCCTTATGAGGCGACACCGCCGGCGCCGCCGGAAACCCAAGACATCCAACATGGAAAGGTCGTCATCATTCAGCAGCGTCACAGACTCCACCATGTCACTAAACATCATCACTGTCACTCTGAACATGGAGAAGTATAACTTCCTGGGCATCAGCATCGTGGGGCAGAGCAACGAGAGGGGCGACGGGGGCATCTACATCGGCTCCATCATGAAGGGAGGGGCGGTGGCTGCAGACGGCCGCATTGAGCCTGGAGACATGCTACTGCAGGTGAACGACATCAACTTTGAGAACATGAACAACGACGACGCGGTTCGAGTGCTGAGAGACATCGTACACAAGCCAGGCCCCATCACTCTGACTGTGGCTAAGTGCTGGGACCCTAACCCTCGGAGCTGCTTTGCTCTGCCAAGAAGTGAGCCAATCCGGCCCATTGACCCTGCTGCCTGGGTGTCCCACACTGCGGCGATGACGGGGGTGTACCCTGCTTATGGCATGAGCCCATCGATGAGCACGGTCACCTCCACCAGCTCCTCCATCGGCAGCTCCGTCCCCGAGACCGAACGCTTCGACGATTTCCACCTGTCCATCCACAGTGACATGTCAACTGTCGCCAAGGCCATGGCTTCCCCGGAGTCGGGCCTGGAGGTGCGAGACAGGATGTGGCTGAAGATCACCATCGCCAACGCCTTCATAGGCTCAGATGTGGTGGACTGGCTCTTTCATCACATGGAGGGATTCTCGGACCGACGGGAGGCAAGGAAGTACGCCAGTAACCTGCTCAAGGCCGGCTACATCCGCCACACCGTCAACAAGATCACCTTCTCTGAGCAATGCTACTACACCTTCGGAGACCTCTGTGGCAacatgaCCCACCTCTCTCTGCACGACCATGATGGCTCCAGCGGCGGGGCGTCGGACCAGGACACCCTGCCCCCTCTGCCCCACCCTGGGGCTGCCCCCTGGCCCATGTCCCTGCCCTACCAGTTTTCCATCGCCCAGCCCTACAACCCCCAGCCCCAACACGACCTGCCACAGGGCTTCCCAGGAGTAGGGGCGGGCAGTGCTGGCAGCCAACACAGCGAAGGGAGCAGCGGCTCCAACTGCAGTAAGACCGAGGGCCGAGGCGGTGCCGGGGGCTCCAACAAGTCGGGTGGGAGTGGCAGCGAATCAGAGATCAGGAGCCATCGGGTCCCCAGCGAGCGCTCTGCGGCCCCTAGCGAGCGCAGCATCCGCAGTTCCTACAGCCATCGAAGCGCACACTCGTCCCACTCACTGGCCTACAGCCCTGGCTTGGTCTACGGCCCCCCAGGCCTGCCTCCTAACCCCCCCCACCTGGCCACAGCTGCTCCAGGAGCCCCACCAGGCCGACAGCTGGCCAACGCTCCCCCAGAGCTCACCGGCTCCCGCCAGTCCCTGCGCATGGCCGTAGGCAACCGCGGCGAGTTCTTTGTCGACGTCATGTGACGCAGGTTATGTCATAGGCGCACCACATAATGGTGGTTAGGGATTTTTTTGTTTAGTGctgagggggacagacaggaggaGGAAGTCTCTAGAAAATCACAGTTGGGGTCAAtgtcatttccttttgaattgccagaattgaaatggaattgagcccaaccctgctGGAAATGTCCTCTTGCTCTTGTGCTCCTGAGGGTGTATCTGATTCGCTATACTTTCTTCAGTGAAGAACCCCCACCCTCGCAGATGGAATCAAAGCGCCTTTTCTCAGTTTCCTCCCTGTGAGACGAGTTTTGCTTGGGTcgtgacagggagggaggccaGGGGAACAGCTGGGGATGACTTGGCGCTTTTCTACGTGGATGTTTTTCATTTGTTCTTTTCTCCAGCTCCACGTCCTGTCCTCCCCAACCTTAGTCCGCCAgagacaaagtaaaaaaaaaaatacaaaaaactcCTCTCTCCATACATCCTTTCACCTAAAATTTGAAAATGAACACTAACCTTTGAACCTTACATGtgcttttgtttgtttgtatgactatgaaaaaaaatgaaaagttaAATAATGTAGTGCAAAAGAATTGAGGCCCTTTCTGTTCTTATGTTTTTATCATAGCTGGTCGCCGATACATGTAGTTTATTTTTCAACACTTAACATGAGCTTCCAGCTTAGACTGATTTTAAAAGTACATTTTCGTCTTAAGTTTTCTTACCAACTCTTTCACACTactccagtgtttcccaaactcggtcctgggggcCCCGAAGGGTGCACAATTAGCTTTTTGCCCTAGCAGTAcatagctgattcaaataatcaatgtATCATggagctttgatcatttgaatcagcagTGTAGTGCTACGGCAAAACAAAAAACACTGCACCACTTGGGGGTCCCCAGGAtttgagtttgggaaacactgcactactcttgagaaaatgtatttttatttataaatATAGTTTTATGACTTTAAGTTGgttgttgtgtttttgtgtgtgtgtgtgcgcgcaagaAACCTGGAGTTTTCCAGGTGGGCGTAGGGACATTATTTGCACAAGCAAGGAATTTCAGTCTAGGAAGGAATGTGAAGGCAATATAGCTTGCAGATGTGTGCGAAGGCTTGACCTGACCATGTCTATTATTTTTTTGTATGTTCAAGCTTCCTTTGAACTGGGTGACCTGCTGTATCATCAAAAAGTTTCCAAATGTAGAGCTCTAGATTTGAGGACACTTTTTTTATGAGGGGAATATGATATGAGAGCATAACTTGAAGTATTTTGAGATTAATTTGGTAGGTGTGCATCATACATGAATCTGATGTGGAATTCCTACATTATGTAGGGATACAATTGAATGTGCAGGAAATGAAATATTTGTTGATATCCTGCTGCAGTAGGCAAAAATAAATGACCAATGTGCTTA

Function

NR:

description
segment polarity protein dishevelled homolog DVL-3-like

GO:

id name namespace
GO:0036342 post-anal tail morphogenesis biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0007275 multicellular organism development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005819 spindle cellular_component
GO:0005938 cell cortex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K02353 DVL; segment polarity protein dishevelled

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985703.1 False 3978 mRNA 0.52 15 55039018 55062662
XM_036985704.1 True 3961 mRNA 0.52 15 55039020 55062662

Neighbor

gene id symbol gene type direction distance location
LOC110530146 LOC106569002 coding upstream 13810 55010905 ~ 55025208 (+)
LOC110530147 rbp2 coding upstream 28861 55008017 ~ 55010157 (+)
LOC110530145 LOC106568934 coding upstream 35094 54999862 ~ 55003924 (+)
LOC118965528 LOC106568937 coding upstream 368903 54557953 ~ 54670115 (+)
LOC110530143 LOC106568938 coding upstream 482885 54526426 ~ 54556133 (+)
ap2m1 ap2m1 coding downstream 2068 55064730 ~ 55072215 (+)
LOC110530151 LOC106599070 coding downstream 39782 55102444 ~ 55106033 (+)
LOC110530153 LOC106568927 coding downstream 57629 55120291 ~ 55136638 (+)
otol1a LOC106569022 coding downstream 121765 55184427 ~ 55190256 (+)
LOC110530158 LOC106568923 coding downstream 160896 55223558 ~ 55261073 (+)
G723525 NA non-coding upstream 8494 55030154 ~ 55030524 (+)
G723294 NA non-coding upstream 36785 55001969 ~ 55002233 (+)
G723210 NA non-coding upstream 171417 54837768 ~ 54867601 (+)
G723112 NA non-coding upstream 337363 54698863 ~ 54701655 (+)
G723115 NA non-coding upstream 343733 54695052 ~ 54695285 (+)
G723543 NA non-coding downstream 11167 55073829 ~ 55074170 (+)
G723539 NA non-coding downstream 23309 55085971 ~ 55101530 (+)
G723563 NA non-coding downstream 45949 55108611 ~ 55108957 (+)
G723601 NA non-coding downstream 118454 55181116 ~ 55181330 (+)
G723606 NA non-coding downstream 123626 55186288 ~ 55186501 (+)
rps28 NA other upstream 1111059 53926018 ~ 53927959 (+)
mrpl34 mrpl34 other upstream 1367159 53670348 ~ 53674103 (+)
G721689 LOC106583873 other upstream 1661313 53377232 ~ 53377705 (+)
LOC110530024 LOC106568723 other upstream 4397852 50607401 ~ 50641183 (+)
LOC110530939 LOC106568914 other downstream 397034 55457870 ~ 55461071 (+)
si:ch211-267e7.3 LOC106568906 other downstream 647578 55710156 ~ 55724271 (+)
G725573 NA other downstream 1920908 56983570 ~ 56984285 (+)
LOC110530213 LOC106568871 other downstream 2406210 57421244 ~ 57478855 (+)

Expression


Co-expression Network