Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110530158 |
| gene name | LOC106568923 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 55223558 ~ 55261073 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| roquin-1-like |
| id | description |
|---|---|
| K15690 | RC3H; RING finger and CCCH-type zinc finger domain-containing protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021613008.2 | True | 8181 | mRNA | 0.49 | 20 | 55223558 | 55261073 |
55,204,000
55,208,000
55,212,000
55,216,000
55,220,000
55,224,000
55,228,000
55,232,000
55,236,000
55,240,000
55,244,000
55,248,000
55,252,000
55,256,000
55,260,000
55,264,000
55,268,000
55,272,000
55,276,000
55,280,000
NC_048572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| otol1a | LOC106569022 | coding | upstream | 33302 | 55184427 ~ 55190256 (+) |
| LOC110530153 | LOC106568927 | coding | upstream | 86920 | 55120291 ~ 55136638 (+) |
| LOC110530151 | LOC106599070 | coding | upstream | 117525 | 55102444 ~ 55106033 (+) |
| ap2m1 | ap2m1 | coding | upstream | 151343 | 55064730 ~ 55072215 (+) |
| LOC110530148 | LOC106568930 | coding | upstream | 160896 | 55039018 ~ 55062662 (+) |
| lrrcc1 | lrrcc1 | coding | downstream | 9184 | 55270257 ~ 55293244 (+) |
| e2f5 | LOC106568921 | coding | downstream | 38057 | 55299130 ~ 55304474 (+) |
| si:ch211-106h4.9 | LOC106568916 | coding | downstream | 73759 | 55334832 ~ 55415215 (+) |
| LOC110530939 | LOC106568914 | coding | downstream | 196797 | 55457870 ~ 55461071 (+) |
| cox-2 | cox-2 | coding | downstream | 218487 | 55479560 ~ 55484248 (+) |
| G723604 | NA | non-coding | upstream | 19769 | 55202865 ~ 55203789 (+) |
| G723606 | NA | non-coding | upstream | 37057 | 55186288 ~ 55186501 (+) |
| G723601 | NA | non-coding | upstream | 42228 | 55181116 ~ 55181330 (+) |
| G723563 | NA | non-coding | upstream | 114601 | 55108611 ~ 55108957 (+) |
| G723662 | NA | non-coding | downstream | 52859 | 55313932 ~ 55332467 (+) |
| G723650 | NA | non-coding | downstream | 74543 | 55335616 ~ 55337587 (+) |
| G723692 | NA | non-coding | downstream | 119094 | 55380167 ~ 55380411 (+) |
| G723700 | NA | non-coding | downstream | 134480 | 55395553 ~ 55395971 (+) |
| G723704 | NA | non-coding | downstream | 138974 | 55400047 ~ 55400268 (+) |
| LOC118965528 | LOC106568937 | other | upstream | 553444 | 54557953 ~ 54670115 (+) |
| rps28 | NA | other | upstream | 1295599 | 53926018 ~ 53927959 (+) |
| mrpl34 | mrpl34 | other | upstream | 1551699 | 53670348 ~ 53674103 (+) |
| G721689 | LOC106583873 | other | upstream | 1845853 | 53377232 ~ 53377705 (+) |
| si:ch211-267e7.3 | LOC106568906 | other | downstream | 449167 | 55710156 ~ 55724271 (+) |
| G725573 | NA | other | downstream | 1722497 | 56983570 ~ 56984285 (+) |
| LOC110530213 | LOC106568871 | other | downstream | 2207799 | 57421244 ~ 57478855 (+) |
| G725878 | NA | other | downstream | 2252533 | 57513606 ~ 57515394 (+) |
