LOC118965626


Basic Information

Item Value
gene id LOC118965626
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55555878 ~ 55564099 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986877.1
ATGACTGCATCATCGCTGCTGGCTGCCCTCGTGGTGGTGACCTGCGCTGCTCTTTTGCCATTCTCTGCTGCTCAAACCAGTTGCAGTGGTCGATGTGGTGACCCATTCGCTCGTGGTCAGCCCTGCCAGTGTGACGCCAGCTGCCTCACTCACGACGAATGCTGCAAGGACTTTGAGGCTCTCTGCACTTTCGGTGAGTCGTGCAGTGGTAGGTGTGGTGAATCGTTCAGACGAGGCAGGCTTTGTGAGTGTGACCCAGGCTGTGTCCGCTACGACACCTGTTGCCGTGACTACCAGAACCACTGTGACCAGAGCCAGACCATATACCCTTCTCCATCCGACCTCTTCCCTGAGACTCAGGACTATGATACCAACGGCCCTTACCCTGGATCCAGCAGCCCGAAGAGCCAGAGGGACTATTCTCGTTTCTCTGAGGACCCAGCTTCCCCTTTGAGCCCTGACTTCTACCCTCTGACTGACAGCTTCAATGTTCCCAGCTCCACCGCCCCAGATACTGTCATGGATGCTGATGCATTGTGTAGTAGTTTGTATGCCAGcttgtgtttgtttgtatgtacGTGTTCTAACATCCTTCATCTTACCTCATGTGAAGCTCTGAGTGATTCAGCCACCAGTCTCTTGGAGggcatctccctcctcctccctacaccCATGGCCACCACTCCCTTGGCCCTGTCTTCCTTCACTGGTCAGCTACCTGGATCTGCTAACTTCCCATCCACTGGCTTGCCTATGCCCAGCCAGGGTGGAGCCTCAGCAGATAATGCTGGCCCCCTGgccctgttgtctggacctcccCTGCTCCCTACTCTGGCAGATATCGCCAAGGCCTTGGGACTAAAGAACCCCATCACTCTGGCAGACATAGCCAAGGCCATGGGCCTCAACACTCCTAATGACCCAATCACTTTGGCAAACATAGCCAAGGCCTTGGGGTTCAACAACCCCAACGATCCTAAACCTCCCCAAAACCCCAAGAACTCCATCCTTCTGGCAGACATAGCCAAAGCCATGGGGCTTAACTCCCCCAATGACCCAATCACTTTGGCAAACATAGCCAAGGCCTTGGGGTTCAAGAGCCCCAATGACCCTAAACCCCAGCAAAACCCCAGCTCTCTGGCAGACATAGCCAAGGCCTTGGGGCTCAACTCCCCCAAGGACCCCATCACATTGGCAAACATAGCGAAGGCCTTGGGGTTCAACAACTCCAATGACTCTAAACCTCCCCAAAACCCCAACAACCCCATAACTCTGGTAGACATAGCCAAGGCCTTGGGGCTCAATAGCCCCAACGACCCCATCACTTTGGCAAACATAGCCAAGGCCTTGGGATTCAACGACCCCAATGCTCCTAAACCCCCCCAATACCCCAGCTCTCTGGCAGACATAGCCAAGGCATTAGGGTACAACAACATCGACCCCATTACTTTGGCAGACATAGCCAAGGCCTTAGGGCTCAAAAAAGAAAACAACCCCTTCACTCTGGCAGACATAGCCAAGGCCTTAGGGCTCAAAAACCTCAAAGACCCCATTACTTTGGCAAACATAGCCAAGGCCTTGGGGCTCAAAGACCCCAGCACTCTGGCAGACATAGCCAAGGCCTTAGGGTTCAACAACCCCAATGACCCCAAACCCCCCCAAAACCCCAGCTATCTGTCAAACATAGCTAAGGCCTTAGGGCTCAACAGCCCCAACGACCCAATCACTTTGGCAAACATAGCCAGGGTCTTGGGGCTGGACGACCCCAACAAACCCATCACTCTGGCAGACATAGCCAAGGCCTTGGGGCTCAATGCTTCCAGCAAATTGGCAGACATAGCCAAGGCCTTGGGGGTCAAGAACATCAACAAACCCATCACTCTGGAAGACATAGCCAAGATCTTGGGATTCAAAAACCCCAAAGATCCAAACACTCTCCAAAATCCCAACACTCTGGCAGATGTAGCCACGGCCTTGGGGCTCAGTGACCCCAATAAACCCATCACTCTGGCAGACATAGCCACGGCTTTTGGACTTAATGACCCCAGCACTCTGGCAGACATAGCCAAGGCCTTGGGGGTCAAGAACCCCAATGACCCTAAAAGAACTAACACTCTGGAATACATAGCCAAGGCCTTGGGGCTCAACGACCCTAACAAACCCATCACTCTGGCAGACATAGCCAAGGCCTTGGGGGTCAACAACCCCAATGACCCTAAACCCCTCCAAAACCCCAACAAACCTATCACTCTGGCAGACATAGCCAAGGCCTTGGGGCTCAAAAACCCCAACAACCTCTTTACCCTGGCTGACATAGCCAAGGCTTTAGGGCTCAAAACCCCCAAAGACCCCATCTCTTTAGCAAACATAGCCAAGGCCTTGGGGCTCAAAGACCCCAGCACTCTGGCAGACATAGCCAAGGCCTTAGGGTTCAACAACCCCAACGACCTTAACCCCCCCCAGAACCCCAGCTATCTGGCAGACATAGCTAATGCCTTAGGGCTCAACAGCCCCAATGACCCAATTACTTTGGCAAACATAGCCAGGGCCTTGGGGCTGAACGACCCAAACAAACCAATTACTCTGGTAGACATAGCCAAGGCTTTGGGTCTCAATGACTTCAGCACTTTGGCAGACATAGCCAAGCCCTTGGGGGTTAAGAACCCCAACAAACCCATCACTCTGGCAGATATAGCCAAGGTTTTGGGATTCAAAAACCCCAACGACCCTAAAACCCCCGGAAACCCCAACACTCTTGCAGACGTAGCCACGGCCTTGGGGCTCAACGACCCCTACAAACCTATCACTCTGGCAGACATAGCCACAGCTTTGGGATTCAATGACCCCAGCACTCTGGCAGACATAGCCAAGGCCTTGGGGGTCAAAAACCCCAATGACCCTAAAATacccaacaaccccaacactCTGGCAGACATAGCCAATGCCTTGGGGCTCAACGACCCCAACAAACCCATCACTCTGGCAGACATAGCCAAGGCTTTGGGACTCAAAGACCCCAGCACTACGGCAGAAATAACCAAGTCCTCGGGCTACAACAACCCCAACACAGGTCTACCAGATGCCGACAGTAACCCAGACCTCTGCAGTGACTTGCCCCTCAACGGATTGACCACTCTGGCCAACGGCACCATTCTCATCTTcaaggGTCATTTCTTCTGGACCATAgatcccatcaccaaggaccaTGGGCCAGCTCACAACATCAGAGAGGAGCTGGGCATCCCCTCCCCCATCGACAGTGCCTTCACCCGCACCAACTGCCAGGGAAAGAGCTATATCATCAAGGGTGATGACTACTGGAGGATGGACAATGGCAACATGGAGCCTGGTTACCCCAAATCTGTTGCCTCTGGTTTTCATGGTCTGACTGGCACCATCACTGCAGCCCTGCCTGTGCCTGCTACCAGGAGGAGGCCTGAGTCTGTCTACTTCTTCAAGAAAGGAGGCACCATGCAGAAATACTCATACCATGCTGGAAGTAGCACTGTCTGTGGCAAGAAATCCAAGCCCAGCGCAAAGAAACGCCACGCTCGCCAAACAGAGATGAGTCTGGGAGCCGAGATCAACATCAAGCTGGCTCTGAAAGGCTTTCCCTCGTCAGTGACCTCAGCGGTGTCTGTCCCCAGCCCCAAGAAGGCCGACGGATACGACTACTTCCTCTTCGCTGGACCTCTGTACTTCAACATCAAGATCTCTGGTGATCTGCCTGCTCTGGCCAAACCAGACAATGCTGATCCCCGCCAAAACTCCATCAAGAAGTGGCTCAAGTGTATCTAGAGCATTCCCTATGGATGGACCAACAACGCACAGAGCACACCTATGGCAaccattttctttctttttttccataTTAGGAAAACCAAAGCAACAGAACAATTATTCTTCttgaaaataaattaataaaaatgtacACTTTTAAAGCACATGGTATCTGCTGATACAAAATTGGGAAGAAAGAATCTaaccattgctctctctctctcttacgatCACAAATTGGTAGGATTTATTTTATTAGACTAAGACACTATGATTGAGACTTGGGAGTAAGGGAATGGAGCAGTCCATGATGACATCATTAGCGGGGTAGGTTTCCTCTACCGAAAGGGAGTCTTCAAGCCCATACCTTGAATGGAAGGGGTGAGAAGAGAAGAGCCATTAGACATCATCCAAAATTGCCACTTCAAGAAGTTTATAACTCTCCATTGTGTTTCTTAAGCTCGGCTCACTAGAGCTTCTTTGAATGTTGTTTTGATGTGCATTGAAATAGCTACCTCTCTGAACTCAAACATCAGCTAAAACGTTTGACAAGACATCACGTTAAGACCACACCAGGGGGGTTTAAATATCTCTTGCATGACCGCAACCCTGCTCCAACCATCCTTGTGTCACATGTAATCCGACATGCCAAACAAAAGTATACAATGTGTCCTTTGTGTCGCTTACTTTCTCTGGC

Function

NR:

description
PREDICTED: proteoglycan 4-like

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986877.1 True 4477 mRNA 0.51 11 55555878 55564099
Loading

Neighbor

gene id symbol gene type direction distance location
odr4 odr4 coding downstream 11744 55533616 ~ 55544134 (-)
LOC110530166 arpc5 coding downstream 87808 55461196 ~ 55468070 (-)
si:ch211-106h4.4 LOC106568915 coding downstream 99826 55423666 ~ 55456052 (-)
LOC110530163 LOC106568918 coding downstream 218280 55335612 ~ 55337598 (-)
LOC110530161 LOC106568919 coding downstream 242274 55304680 ~ 55313604 (-)
LOC110530170 LOC106568909 coding upstream 3744 55567843 ~ 55614934 (-)
LOC110530171 LOC106568907 coding upstream 119526 55683625 ~ 55688984 (-)
LOC110530174 LOC106568905 coding upstream 166335 55730434 ~ 55764053 (-)
LOC110530175 LOC106569017 coding upstream 205327 55769426 ~ 55774173 (-)
LOC110530176 LOC106568901 coding upstream 235809 55799908 ~ 55814928 (-)
G724246 NA non-coding downstream 8761 55546847 ~ 55547117 (-)
G724245 NA non-coding downstream 9883 55545734 ~ 55545995 (-)
G724042 NA non-coding downstream 45314 55510338 ~ 55510564 (-)
G724020 NA non-coding downstream 56018 55499466 ~ 55499860 (-)
G723979 NA non-coding downstream 85870 55423054 ~ 55470008 (-)
G724264 NA non-coding upstream 10960 55575059 ~ 55575687 (-)
G724272 NA non-coding upstream 24389 55588488 ~ 55589616 (-)
G724366 LOC106568906 non-coding upstream 153765 55717864 ~ 55718713 (-)
G724370 NA non-coding upstream 156985 55721084 ~ 55721324 (-)
G724371 NA non-coding upstream 158004 55722103 ~ 55722418 (-)
G723966 NA other downstream 158993 55396624 ~ 55396885 (-)
G723955 NA other downstream 178102 55377281 ~ 55377776 (-)
G722864 LOC106581475 other downstream 1273900 54281685 ~ 54281978 (-)
G722854 NA other downstream 1304332 54251114 ~ 54251546 (-)
G722761 NA other downstream 1416537 54124379 ~ 54139341 (-)
G724287 LOC106568908 other upstream 71439 55635538 ~ 55646014 (-)
G724400 NA other upstream 221418 55785517 ~ 55791485 (-)
G724943 LOC106604981 other upstream 556104 56120203 ~ 56128288 (-)
G725007 LOC106568897 other upstream 655417 56219516 ~ 56232939 (-)
LOC110530186 tm56b other upstream 810554 56374588 ~ 56386555 (-)

Expression

LOC118965626 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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LOC118965626 Expression in each Bioproject

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LOC118965626 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2.
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Co-expression Network