LOC110530181 (LOC106568899)


Basic Information

Item Value
gene id LOC110530181
gene name LOC106568899
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55915905 ~ 55978796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985741.1
gccgcattttggtcttccgatccatctcacctctcctcttcagatgaagaggaggacggtcGTGACAACTAGGAATTCAGCCAAAAAATGTGTTTCATTTTtataggaaatctgttcccaaaattcccacaaaaaatatatatatatgtgatcgTGTCTCAAAATGCAATGAAGCTGTGAAATTATGTCATTTTCAAATGCAATCTCCTTTTgagcttagttgtggtcaatttgagGTGGACAAATTATTATTATCCAACAAACAACCACTCGTTCCGACAAAAATTGGATTttagctgaatctagttgcctacagATGTTGCTGTCCTACACATGAACGTTAACAAGATCCTGTGGCTCATGCTAATGGTTGGCGCGCGCTGTCACTCATCATCGCTCAAGGCGGTAAGAAGTCTGCATGCCTATGGTTCCGTACATTCCACGCACATCTCTCACGCCACGGAAGGAAAGTCGATTCCATCCCACGCGCTCATGTTCCCAACCCGCTCcacactctctttctgtcttagCGCTCACCCTCGCATGGATCTCTGAGCGGTGTCAAGACTGAGCTCGCCTCTTCACCTAAACACGATGTTTTATGGATTATCTTCCATTGTAGTAGCGAGAGATATATGTGGATGGAACGCGGAGCGAGGTGGAGTACTGGACGGGTTACAGCAGTAGCCTAAAAACCGGGCGGCTGGGTGTTCCATTCAACCATGCTTTACTTCCAGCTGGTGATCATGGCTGGGACTGTCATGTTGGCATACTACTTTGAGTACACCGACACTTTCAACGTGCACGTCCAAGGGTTTTTCTGCTATGACAATGCCTACACCAAGCCTTACCATGGACCCGAGGCGTCCAGCGCTGTTCCTCCTGTAATACTTTACGCAGTGGTCTGCGGATTGCCGTTGCTTTTGATCACAGCCATAGAGTCGGTGTTGTTTCTGCTTCAGTATATGTCAGAGGACCTGGACAACAGGGAGAAGATCATCGTCATGGGAGACTGCTGTTACCTCAATCCTCTGGTGCGCAGGACCTTCCGCTTCCTGGgtgtgTATGCGTTCGGACTGTTCTCCACAGACATCTTTGTAAACGCAGGCCAGGTTGTAACAGGAAACCTGTCCCCCCACTTCCTGACGGTGTGTAAGCCCAACTACACGGCCCTGGGCTGCATGCAGACCGCCCGCTTCGTCAACCAAAAGGGGGTGTGCACGGGAAACGAGGACGACATCATGCGCGCCCGCAAATCCTTCCCCTCCAAAGAGGCGGCACTCAGTGTCTACGCCGCGCTCTACACAGCGATGTACATCACGTTAACAGTGAAGGCCAAGGGGACCAAGCTGGCCAAGCCTGTCGTATCTCTGGGTCTCATATGTCTGGCGTTTCTCACGGGCATCAACAGGGTGGTGGAGTACCGCAACCACTGGTGTGACGTCATCGCCGGATTCATCATTGGAGGGGCCATAGCAGTCTTCATGGTTCCGAGAGGTGTTCCCAAGTCATGTCATTTCCACTTtgttctccatctcctccatttcAACTGATAGGCACGTCACCTGATATGCAAGTACGTATCCCTAATCAACATTACATCATCTTGAGGTCACTCAGCACTGTATCTGCTTTCACATCAATGCCTTCAACATTTTTGTTCAGAGTACAATGACCCCTCTATCCTTTATCATATGATGCATTAACCAAAAAAGCAGCTAACCCCAACTATGATGTT
>XM_036985740.1
gccgcattttggtcttccgatccatctcacctctcctcttcagatgaagaggaggacggtcGTGACAACTAGGAATTCAGCCAAAAAATGTGTTTCATTTTtataggaaatctgttcccaaaattcccacaaaaaatatatatatatgtgatcgTGTCTCAAAATGCAATGAAGCTGTGAAATTATGTCATTTTCAAATGCAATCTCCTTTTgagcttagttgtggtcaatttgagGTGGACAAATTATTATTATCCAACAAACAACCACTCGTTCCGACAAAAATTGGATTttagctgaatctagttgcctacagATGTTGCTGTCCTACACATGAACGTTAACAAGATCCTGTGGCTCATGCTAATGGTTGGCGCGCGCTGTCACTCATCATCGCTCAAGGCGGTAAGAAGTCTGCATGCCTATGGTTCCGTACATTCCACGCACATCTCTCACGCCACGGAAGGAAAGTCGATTCCATCCCACGCGCTCATGTTCCCAACCCGCTCcacactctctttctgtcttagCGCTCACCCTCGCATGGATCTCTGAGCGGTGTCAAGACTGAGCTCGCCTCTTCACCTAAACACGATGTTTTATGGATTATCTTCCATTGTAGTAGCGAGAGATATATGTGGATGGAACGCGGAGCGAGGTGGAGTACTGGACGGGTTACAGCAGTAGCCTAAAAACCGGGCGGCTGGGTGTTCCATTCAACCATGCTTTACTTCCAGCTGGTGATCATGGCTGGGACTGTCATGTTGGCATACTACTTTGAGTACACCGACACTTTCAACGTGCACGTCCAAGGGTTTTTCTGCTATGACAATGCCTACACCAAGCCTTACCATGGACCCGAGGCGTCCAGCGCTGTTCCTCCTGTAATACTTTACGCAGTGGTCTGCGGATTGCCGTTGCTTTTGATCACAGCCATAGAGTCGGTGTTGTTTCTGCTTCAGTATATGTCAGAGGACCTGGACAACAGGGAGAAGATCATCGTCATGGGAGACTGCTGTTACCTCAATCCTCTGGTGCGCAGGACCTTCCGCTTCCTGGgtgtgTATGCGTTCGGACTGTTCTCCACAGACATCTTTGTAAACGCAGGCCAGGTTGTAACAGGAAACCTGTCCCCCCACTTCCTGACGGTGTGTAAGCCCAACTACACGGCCCTGGGCTGCATGCAGACCGCCCGCTTCGTCAACCAAAAGGGGGTGTGCACGGGAAACGAGGACGACATCATGCGCGCCCGCAAATCCTTCCCCTCCAAAGAGGCGGCACTCAGTGTCTACGCCGCGCTCTACACAGCGATGTACATCACGTTAACAGTGAAGGCCAAGGGGACCAAGCTGGCCAAGCCTGTCGTATCTCTGGGTCTCATATGTCTGGCGTTTCTCACGGGCATCAACAGGGTGGTGGAGTACCGCAACCACTGGTGTGACGTCATCGCCGGATTCATCATTGGAGGGGCCATAGCAGTCTTCATGGTTCCGAGAGGTGTTCCCAAGTCATGTCATTTCCACTTtgttctccatctcctccatttcAACTGATAGGCACGTCACCTGATATGCAATCATGGTGTTTTCACCCACCCATCATGCAGCTGAAACTCACTTCACGTGAGAACTATGCACCCCCCCAAGGAGAGACATGACGATCTTTACCGCTGCAGGTACTGTATGGAGTAGTGTGGGTCCCAAACCAACGCTGTCCCAACACCCCCGCCTGGTGTCTCTTGTATTCAGCCCGTGCCCTTGGTTATACCTCTGCTTCCACCTGAGGATATACACACTGCAGCACATGGGTCATTTCCTGACAACATCATTTGTGATATTTGAATAACCACATGTGTCCTCCCATCGGCCCCCCATTTACCAGTTACTAATCCATGTGACATGAGTCGTCATAAACTGATATCCCAACAATGCTACTAAAGTAACCATTGCTACTTAGTAACCATTGCTACTTCCAACATGGCCCATGACAATAGTCTCACAATACCGTCATTTGTGCAGTAGCCCAATTCCATGCTATCAATATAGCATCCTTCGCTACTAATActgctccttcagttactgtccctacagcgcCTGCCGTGAGAACACCTCCTGCATGTAATCTGTCAAATGTACACCGGCTGTTAGAAATTGGAGAAAAATGAACGAGTTGGGAATAATATCCAAACTAACAAAACTCTGAGTCACAGGTGTCCTGAAAGCTTTACCATAGTGTCTGAAATGCCACCACAATCTCTTCTACTCTTACCACGATCTAGGTATGTGTAATGTTCAACTAAATCCCCATATTGTGTACAGTTAgctgctctccctcttccattAGAGGTCTCCTGTAACAATATACAGTCTCCGGGGAATGATACTCCTCCAtaatctaacccataacacactatactcctaaTGCATTTTCTACAGTTATAAACATACTAACACAAAGTACATGTTTAATAGCTTTGCACAACTCATTGATGCGATGTAACGTAACAATTCTGAGTGCAGGGTAAAACAGTTAAAACCTTCATGGTTGTCCCAAGCTTTCATCCAGTGATTCCCCCCCAAACAATCCACCTCCCCTCAGGATGACACTCAGCGATAAGTATCCCAATCACAACTGAAACGTTTGATCAATTCTCCAACCCATATTTAGATTGACTGACCTCAGTGCTGACTTTGAGTCTAGGGCTCAAATTCCAGTTGACCAACTTAGCACAGATCATCCCTGCTAGAACATACATTTATAAACAACCTTTTATTGCTGGTCATAACTCTTCTcaatacagccccccccccccccccccccccttgtcccTGTTTTCCTGTCATGATTGGCCTGGTAAAGAaagatcagtatctcaatgcattcttgAGTCTAAATAGTTAGCAAGGCGTATTCCAACTCCCGGATCCCAATCTGGTGATATTTGtatcaaaacaaaaacacaacatgAAATCAGCAATACATATATCACAATCCATTTGAAGTAACTGTCATCCCTATTTGCCTTTCTATATGCAGCCTGAACACAGTACCACTGTATAAGTACCCAAAGACCAGGACCTCAGGGAACTGGTCATTTTCCCCTTTCAAACACGTGATTAAACAAAAACATGTTAAATCAAAAATGAACAAATTCGAATAACTAATCCACTTAGACTTACAACTCTTTATAACTCCCTAcggaaataataataatttcctaAAGTAATGGTACAATTTGGATAGAGAATGGTGTTTCTCATGAATTTTATAATGAAATCCCCCTGTTCCGTCAATTTCTAATGAGGGTGATCATTCCTCATTAGGATTTTGTTTGTGTACAGAGCTTTCTACACCATTAAAATgtttcctctcccttcctttccctttcctttggAAACCATTTAAATAGCTCTTCAAAACATTTCCATCCTCCTGCATACCCAATTTAACTGCATTGAAAAGACCCCATACAATAAATCCCACAACATCGCGACAGTATCTCTCTACCGAGTCCAACGATTCACTGGTCTCCTTTTCCCCATGATTCTCTATAACCACCACACCACATAAAATATGAAAAGTAAATTTTAGGTTTGGTAAGCCCTATACCAATTCCTCATGATCCCAGTTCATTTTAGGTTAGGTAACCCCTATACTAATTCCTCGTGACCCCTCCACTCTTTCGTCCATTCTAGAATTCCATTCCAGAATAAGACATCAAATGtaaatttatttaaaaataaaaccaAATAAAATGTCTGATTTAAACAAACCCTAAGGAGTGTTTGGCCATATAATTGAAATGTTTTACCTTTAGAATCCATTCCCCTGGCATTTCGCCTTGATTCTTCAACCCAAAATACATTTTCCTGTGGCAAATTTAGCCAATTTGTCATCGTAAGGAATTCGCAATATATACATATGGTTTTCTAACACTTTCTCTCACCAAGGCAGCCGCCTTAGCCATTCTGTCTGCTTTACGATTCCTTATGCCGATTTTATCTGTACGACTAGTATGAGCTTCACATTTCACCACTGTTAATTTACTGGGTAACTGACATGCTTCTGATAATACCTCCAGACCATTTTTAATTGTGTTCCTGTCGCTTAACATGCCCCGTTGTGACCACAATGTACCGAAATCATGAACTACTCCAAATGCATACCACACACAGCGTACCCCGTTATGTTACTCTCTTCCCTTCAGTGTTCATGTATCTAGAGCCATCTGTATACAATATTTTTCCCGATTCCAATGCTGTCTCTTGCAAATCAGGCCTAGGTTTTGGAGTAATCTGATCTGGGTGACATGTCTGCGATTCACCCTCCCCATGCAACGACATTAACGACGCAGGTTTCAAAGCACCAATCACCTGAAATTGTACATTTTCATGTGATGTTCACTATGGTTGCTACTGCGTGTGTAACATACAAATCTACTTTTTAACCCATTGTAATGGAAGCCGTGttatgcaacactgtttctgaCGCCTGTACCTCCCTAAGGTACGGTAGTAGCATTCCTCTTGGCCCTCTTCATTTTTGCGTAACCATCGCGCTACAATGTTTTTCCTGTTCACGAACAACATTTTTTAACAGATCATTTTAGATTTGGCAATCCCAATGCTGGCACTTGACACAATTGCTTCTTTAACTCGACAAACGCTTCCTCACACTCTTGAGTCCACTCTATCCTCTCATgggggaccccccccccctttcgtCAACTTTGTAAGTGTC
>XM_021613048.2
gcattttggtcttccgatccatctcacctctcctcttcagatgaagaggaggacggtcGTGACAACTAGGAATTCAGCCAAAAAATGTGTTTCATTTTtataggaaatctgttcccaaaattcccacaaaaaatatatatatatgtgatcgTGTCTCAAAATGCAATGAAGCTGTGAAATTATGTCATTTTCAAATGCAATCTCCTTTTgagcttagttgtggtcaatttgagGTGGACAAATTATTATTATCCAACAAACAACCACTCGTTCCGACAAAAATTGGATTttagctgaatctagttgcctacagATGTTGCTGTCCTACACATGAACGTTAACAAGATCCTGTGGCTCATGCTAATGGTTGGCGCGCGCTGTCACTCATCATCGCTCAAGGCGGTAAGAAGTCTGCATGCCTATGGTTCCGTACATTCCACGCACATCTCTCACGCCACGGAAGGAAAGTCGATTCCATCCCACGCGCTCATGTTCCCAACCCGCTCcacactctctttctgtcttagCGCTCACCCTCGCATGGATCTCTGAGCGGTGTCAAGACTGAGCTCGCCTCTTCACCTAAACACGATGTTTTATGGATTATCTTCCATTGTAGTAGCGAGAGATATATGTGGATGGAACGCGGAGCGAGGTGGAGTACTGGACGGGTTACAGCAGTAGCCTAAAAACCGGGCGGCTGGGTGTTCCATTCAACCATGCTTTACTTCCAGCTGGTGATCATGGCTGGGACTGTCATGTTGGCATACTACTTTGAGTACACCGACACTTTCAACGTGCACGTCCAAGGGTTTTTCTGCTATGACAATGCCTACACCAAGCCTTACCATGGACCCGAGGCGTCCAGCGCTGTTCCTCCTGTAATACTTTACGCAGTGGTCTGCGGATTGCCGTTGCTTTTGATCACAGCCATAGAGTCGGTGTTGTTTCTGCTTCAGTATATGTCAGAGGACCTGGACAACAGGGAGAAGATCATCGTCATGGGAGACTGCTGTTACCTCAATCCTCTGGTGCGCAGGACCTTCCGCTTCCTGGgtgtgTATGCGTTCGGACTGTTCTCCACAGACATCTTTGTAAACGCAGGCCAGGTTGTAACAGGAAACCTGTCCCCCCACTTCCTGACGGTGTGTAAGCCCAACTACACGGCCCTGGGCTGCATGCAGACCGCCCGCTTCGTCAACCAAAAGGGGGTGTGCACGGGAAACGAGGACGACATCATGCGCGCCCGCAAATCCTTCCCCTCCAAAGAGGCGGCACTCAGTGTCTACGCCGCGCTCTACACAGCGATGTACATCACGTTAACAGTGAAGGCCAAGGGGACCAAGCTGGCCAAGCCTGTCGTATCTCTGGGTCTCATATGTCTGGCGTTTCTCACGGGCATCAACAGGGTGGTGGAGTACCGCAACCACTGGTGTGACGTCATCGCCGGATTCATCATTGGAGGGGCCATAGCAGTCTTCATGGTTCTAGGGGTGGTGCAGAACTTCAAAGGGAAGACCCTGCTGAACGAGATCCCACCGGAGGAGAGAGTGGTCGGCAGTGTTCCTATGATGGGCCAGCCCCGCATCATGGACAACACCATGGAGAAGTACATAGCCTCACAGAATTCTAATACTTTCGCCGAGGTCACATGACAATGAATGTGTCACCTGACACACAGTTGGATGTGGTTGCTGCTCACTGCCATGGTCGCCAGAGGGCAACACAGATCCTGAAGATGATATCTATGTATAACAGGGTTGTGGTCAGTAGTACTTAGTGAATTctggaagtaaactgaaattcaatAATTGAAAAAAGGCATCTGTTTTCAAGACTTCtcaataaacaaaaaaaaatgttgttttccattattttattttaaattcaaATCACTTCAAGAATTGACTTCAATtcaaattgaccccaaccttgATCTATACAGTATGACCCGATTTCCAAATCAAACATCCTTTAGCTTTACTTTTTTTTTGCTCTCCAATCAACATGTTCGCTCCTTCTGTTCTTTGACTGATGAATGGTGTTCATTGATTTCCCAAAAAGTATTCCTTATTTGTATATACTATAAGTTACTGTATCAAACACGtctcatatacagtatgtgtgtatatatatatatatatgtattgtacggcatttttattttatttcctttAATGTCAACGATCATGAATCCTAGCCAACAGCGTAAACGTGTATAATGTGTTTTCTATCATGGCTGTTTATTACTTTTTATGTGCTTGCTTGTGAAAGTGCAATCCAAGCTGTATCTTGTCAGAGCCAATATGTATGGGCCTACTTCTGTCTAGATTTTACCAACCAGACCTGAGAGAATGAAGAGCCAAAGATCATTGCCATTTTATATAGGCTTTGGTAGTTTTCAGAGAAATCCATGAATGAATTGTGTCCCTCTTACGATTAGCTCGAAATACATGTGCATTTAGGTGTGCAGCTATGCGACTGTGTGTGCATATGCGCATGGAGCCGTAaaagtgtgtccgtgtgtgtgtgcttgataaACCTTTGAACATAATTTTCTCTTGTGGATTGAAGGATGTTGCTTAGGGCTTGCCAGACAATCAACAACCATAATATGACCACGGTCAGGCAACAGAGCCAGTGCGGAAATAATATGGAAATAAAGAGATGTTTTTTCATTTCTCGGGTTTCATTCCTCCTATTTTATTGTGTTGCAAAAGCATGGATCTATACTGTTTGTTGATATGTCAGATACCTGTTAAGCACAATATGGAGTATTGTTTTAAACTCACAGGCCAGCAATGATATTCATAGTTGATGCATGACCAGACTTTAGTTTCCCAAATGCATTATGGGTAAAGTTATTTTTATACCACCACAATTTGATGAAAACCCCTGTTATATGTTAATCTCCAAGATGACATTTTTACACTGTTGTACTGTACGTTGCTGTACTGTTTACCGTGTACTGTCTGAATGGTATGTCGTACTGTATGACCCCTAACAGTCTCAGACCGTCATCTGAAAATAGGGAGGGTTCTACTATTCATGTGCAGTTAGAAAAGGTTTCTATACATGTACAATGTGATGGCATGGTTTTTATACTTTTAACATCTCATTATTTACTTTGTCTTAGTTTTTATAGAAAATGTAGGGGGCATTTGAATGATTCTGGAGATTGTTGTTCACTATCAACCATTTCGTTTcttaaaaaatatgtaaaaatattaattataatatataatataaaatgtataatattAAAGTTGGATTTGTGTATTGTTTTGATCTTATATATAGTTTGAGTGTTAGTTTTCGCTTGTACAGATTTCGTTACTTTTATAACTCTTGTTTTGATATTGTCCCATTATACCAGATCTTTGTTTATTGATCTCATCACTATGAGTAACATTAACCCAGCAGCAGCTGCAGGACCTCTTACACTGTAGAAAATGAAAAAATAACTAAACTGTGAGAAAGTTGCGGTGTAAATGTATTTGaatgaaatcaaaataaataGGTTTG

Function

NR:

description
phospholipid phosphatase-related protein type 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985741.1 False 1738 mRNA 0.49 5 55915905 55950754
XM_036985740.1 False 4740 mRNA 0.44 6 55915905 55953989
XM_021613048.2 True 3525 mRNA 0.42 6 55915908 55978796

Neighbor

gene id symbol gene type direction distance location
frrs1a LOC106568904 coding upstream 115261 55786481 ~ 55800644 (+)
si:ch211-267e7.3 LOC106568906 coding upstream 191634 55710156 ~ 55724271 (+)
LOC110530172 LOC106568908 coding upstream 232983 55631924 ~ 55682922 (+)
LOC110530941 LOC106568999 coding upstream 285691 55625971 ~ 55630214 (+)
LOC110530940 NA coding upstream 361111 55549889 ~ 55556293 (+)
LOC110530182 NA coding downstream 91183 56069979 ~ 56075431 (+)
LOC110530943 LOC106568897 coding downstream 135158 56113954 ~ 56250195 (+)
LOC118965531 NA coding downstream 314796 56293592 ~ 56305010 (+)
LOC110530187 cnn3 coding downstream 425988 56404784 ~ 56424593 (+)
tf tf coding downstream 486939 56465735 ~ 56469620 (+)
G724484 NA non-coding upstream 5805 55909885 ~ 55910100 (+)
G724480 NA non-coding upstream 8215 55907322 ~ 55907690 (+)
G724473 NA non-coding upstream 16701 55898949 ~ 55899204 (+)
G724458 NA non-coding upstream 31785 55883765 ~ 55884120 (+)
G724457 NA non-coding upstream 32155 55883475 ~ 55883750 (+)
G724720 NA non-coding downstream 107143 56085939 ~ 56086154 (+)
G724732 NA non-coding downstream 115772 56094568 ~ 56094806 (+)
G724746 NA non-coding downstream 123217 56102013 ~ 56102367 (+)
G724752 NA non-coding downstream 127195 56105991 ~ 56106250 (+)
G724766 NA non-coding downstream 210411 56189207 ~ 56189584 (+)
LOC110530939 LOC106568914 other upstream 455785 55457870 ~ 55461071 (+)
LOC110530153 LOC106568927 other upstream 779274 55120291 ~ 55136638 (+)
LOC118965528 LOC106568937 other upstream 1245791 54557953 ~ 54670115 (+)
rps28 NA other upstream 1987946 53926018 ~ 53927959 (+)
G725573 NA other downstream 1004774 56983570 ~ 56984285 (+)
LOC110530213 LOC106568871 other downstream 1490076 57421244 ~ 57478855 (+)
G725878 NA other downstream 1534810 57513606 ~ 57515394 (+)
G725907 LOC106581475 other downstream 1575927 57554723 ~ 57555482 (+)
LOC118965533 NA other downstream 1874216 57850799 ~ 57854417 (+)

Expression


Co-expression Network