LOC110530182


Basic Information

Item Value
gene id LOC110530182
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56069979 ~ 56075431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474488.2
ttgctccctttctctttctctcctcctctctctctccctctctttctcctcctctcttgctgtctctccctcAGTTTCTCAGTCCCTCTTTATCCGTCCGTGAGTTTGTTTGCCTTGGCGAGTGCAACAACTGGCTTCGATCAGTGACTTTCCAAtcttcttgtttttattttattttttccccccttAATGAGTGAGCTGTGCCTACGTTCTCTACCACCTACCATACTGGAAGAGTGCATCTCCGGGACTAGAacgactggctggctggttggctggttgccTTACTGACTGTTTGACTGACAGACTCGGTGGGTCTTGGGTGCTTTGGGGCTGTGGCGTCCAGCATAGAGGCTGAAGATATACAGGGGGGGTTCCGCCTGTTTCAATGCACCAGCGACGGCAGTAGGAGCACATGTTTCCCTGCGCTCTATCCTCTGTGCTCCCTGCTCTCACTAGCATGGTAAACCACATGAATCAAGCGTGGAACGGGGCCGCACGGCGCCGTCGGCAGCAACTGCAGCCTTAAACGATCCCAGTCTTCTCCTCGCAGGCGAGGCGACGTCAGATGACTGACTCTCCGGCTTTGTGCACAGTGGAAGGGAAGCTCTCTCTCAGGAGGAACAGGAATGTAAGGGGCTCTCATTTTGCTTGGATTTGCGTCAGTAAAAGCTGATTGCCCAGTGCCACAGAGGAGTGCAATCGAATGAAGGGAATTCCGAGGAGAAGAATGGTCTGATTGGTGCCTGCAGAACACATCTGACATGGAGGGCCCCACCTGCCCCATCCTCGGGCAGCAGGCTATCTTCAATCAATCACTCAACTCATAGAGAACATGACATCACTCAGGCTCACACTACTATTGAGGACCTCTTGAGTTCCCCTGCTGCTGTCCCCAatgccctctcttctcttcctccccctcctctgtgaCTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACGGATCACGTTGTTATTGCTTAAGAATACGCGTAGTTGAGGAGAGTCCTCTCGACACTGACTTGGAGGAGCTAAAGGAGCTAACGTCCCGCTGCATGAGCCAAAGTAGAGCCAGGATGACTGCCTGGTTTCCATATCCAGGACCATTTATCATGTAACTGGACAGATTAACAAAGCCTAATTACTTTACTGGGCTTTCAGCTACGCTTTCCAGCCTCTATAGACGCTAGCAGCAAGAAGAGAgaaagcgcgagagagagagcgagagagagagaaagcgagagagagagaaagcaaggagagagagcgagagagagagagagagagagatattaaacTCTTACAGTTACCTCTCCCAGGATGTTTTTTTTCACAGTATCGTATTATGGTGCAGTGTAATATGATTTGATTAACCATTCTGACGAATGTTGTGTCTTCTGTGTATCGACTCCACCagtgtttatttattatttagcATTTTGTACAATTTGTTCATTTTGCCTTTCCGGATGAAACAGGCTATTATGTTCGTTTTCACTTTAGGGAGTCGTGTTTGGTACTACAGGCTTGCTTGGTGCAGTAATGGACATTTGTATTGGtcttaaaaaatacaaaagacCTCCTACGCAACATTTAGCTTGCATACAAATAGATTTTGTGGTAACACGGTTTCTGGCCTCAGGACTGCTGCCCAGAGATGGCCATATTGCCTGCGGATACCTCATTGAGAGTGAAAGAGTAGATTGGGAGAATATGTCAGGAGAAGGAAAAACTATGAAGGAGTAACTGAATTTGAACCCAACATATGTATATTATACCTCAGTCCTGTGTATCAATACTAAAGGAAATTATATTACAGAGAGCTGGTTGTTAGTGATCACAGAGTAAATATCAATACTCAGAGAAACTGCACTGGCACATTTAATTTATTCCACAATCTTGCGCCATACAGGCCGTCCCTCTGAAGATAAATTCTGCAAGCCCAGTAACATTATTCCCTGACTTAATGTGTTTGCGACAAAGGGACATTCTCATCCAAAATGATTTGCACATCAAGAAGAGTCATTACGCTTTAATGGTGTCGGGAAATGACCCTCTCTTAGCTTACGCTGGTGGAAATCAATGAGGCCTGCATTACAGTGTTATTGTGACGGTCATTTTCTGCtgaatcatgctgtttaatttcTTGCCCTTCGACAAATCATCCACCGACTTATCAATTTGGCCAGAGAGCTTACGTTTGATTGCATTAGATGAGatcacataaaataaataaaataattgaagTTCCTCTAAAAATGCTACCATGACATCTCTTGAGTCTGCTATGAATCTAATGATCCTATCAATCTCAAGCTTATCTAAGACTGAAAGGAGAAGGCAGAGAGGCTCGAGCCTCTATTGAATCTATTTGTACTGTCATAACTGGATCCTACCAGTAGGGGAGCCCTGTAGCTCACAGTCAGACAATGAACTCAATGAACTGTTAGCAAAGCTGTGTGTTTGGCAGGACAAATGGGCATGCTTTTGACATTCTGTCATTTCCGTTTATGACATTTTGAACATCATTTTCTCATCAGATATTTTCGTGAATTGACTGTATCTATTTTTATGGCATGTTGAAAACCCAGACAATCTGTAAAATGTTGTGGTCCGAAAACAATATGACAAACAATAAACAAACCATTTGAAATATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474488.2 True 2665 mRNA 0.45 3 56069979 56075431

Neighbor

gene id symbol gene type direction distance location
LOC110530181 LOC106568899 coding upstream 91183 55915905 ~ 55978796 (+)
frrs1a LOC106568904 coding upstream 269335 55786481 ~ 55800644 (+)
si:ch211-267e7.3 LOC106568906 coding upstream 345708 55710156 ~ 55724271 (+)
LOC110530172 LOC106568908 coding upstream 387057 55631924 ~ 55682922 (+)
LOC110530941 LOC106568999 coding upstream 439765 55625971 ~ 55630214 (+)
LOC110530943 LOC106568897 coding downstream 38523 56113954 ~ 56250195 (+)
LOC118965531 NA coding downstream 218161 56293592 ~ 56305010 (+)
LOC110530187 cnn3 coding downstream 329353 56404784 ~ 56424593 (+)
tf tf coding downstream 390304 56465735 ~ 56469620 (+)
LOC110530188 LOC106568889 coding downstream 411623 56487054 ~ 56509308 (+)
G724484 NA non-coding upstream 159879 55909885 ~ 55910100 (+)
G724480 NA non-coding upstream 162289 55907322 ~ 55907690 (+)
G724473 NA non-coding upstream 170775 55898949 ~ 55899204 (+)
G724458 NA non-coding upstream 185859 55883765 ~ 55884120 (+)
G724457 NA non-coding upstream 186229 55883475 ~ 55883750 (+)
G724720 NA non-coding downstream 10508 56085939 ~ 56086154 (+)
G724732 NA non-coding downstream 19137 56094568 ~ 56094806 (+)
G724746 NA non-coding downstream 26582 56102013 ~ 56102367 (+)
G724752 NA non-coding downstream 30560 56105991 ~ 56106250 (+)
G724766 NA non-coding downstream 113776 56189207 ~ 56189584 (+)
LOC110530939 LOC106568914 other upstream 609859 55457870 ~ 55461071 (+)
LOC110530153 LOC106568927 other upstream 933348 55120291 ~ 55136638 (+)
LOC118965528 LOC106568937 other upstream 1399865 54557953 ~ 54670115 (+)
rps28 NA other upstream 2142020 53926018 ~ 53927959 (+)
G725573 NA other downstream 908139 56983570 ~ 56984285 (+)
LOC110530213 LOC106568871 other downstream 1393441 57421244 ~ 57478855 (+)
G725878 NA other downstream 1438175 57513606 ~ 57515394 (+)
G725907 LOC106581475 other downstream 1479292 57554723 ~ 57555482 (+)
LOC118965533 NA other downstream 1777581 57850799 ~ 57854417 (+)

Expression


Co-expression Network