Gene
RNA
| Item | Value |
|---|---|
| gene id | tf |
| gene name | tf |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 56465735 ~ 56469620 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| tf | Enables ferrous iron binding activity; iron chaperone activity; and transferrin receptor binding activity. Involved in cellular response to iron ion; positive regulation of receptor-mediated endocytosis; and regulation of iron ion transport. Located in several cellular components, including basal plasma membrane; clathrin-coated pit; and cytoplasmic vesicle. Is extrinsic component of external side of plasma membrane. Part of HFE-transferrin receptor complex. Implicated in anemia; atransferrinemia; glucose metabolism disease (multiple); iron deficiency anemia; and restless legs syndrome. Biomarker of glomerulonephritis; hypertension; and membranous glomerulonephritis. |
| description |
|---|
| tissue factor precursor |
| id | name | namespace |
|---|---|---|
| GO:0006879 | cellular iron ion homeostasis | biological_process |
| GO:0007596 | blood coagulation | biological_process |
| GO:0006826 | iron ion transport | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0008199 | ferric iron binding | molecular_function |
| id | description |
|---|---|
| K03901 | F3, CD142; coagulation factor III (tissue factor) |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001124358.2 | True | 1470 | mRNA | 0.42 | 6 | 56465735 | 56469620 |
56,464,000
56,465,000
56,466,000
56,467,000
56,468,000
56,469,000
56,470,000
56,471,000
56,472,000
56,473,000
56,474,000
56,475,000
56,476,000
NC_048572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110530187 | cnn3 | coding | upstream | 41142 | 56404784 ~ 56424593 (+) |
| LOC118965531 | NA | coding | upstream | 160725 | 56293592 ~ 56305010 (+) |
| LOC110530943 | LOC106568897 | coding | upstream | 215540 | 56113954 ~ 56250195 (+) |
| LOC110530182 | NA | coding | upstream | 390304 | 56069979 ~ 56075431 (+) |
| LOC110530181 | LOC106568899 | coding | upstream | 486939 | 55915905 ~ 55978796 (+) |
| LOC110530188 | LOC106568889 | coding | downstream | 17434 | 56487054 ~ 56509308 (+) |
| LOC110530195 | LOC106568885 | coding | downstream | 88726 | 56558346 ~ 56575547 (+) |
| tyw3 | tyw3 | coding | downstream | 132278 | 56601898 ~ 56604165 (+) |
| lhx8a | lhx8 | coding | downstream | 194229 | 56663849 ~ 56667934 (+) |
| LOC110530204 | LOC106569008 | coding | downstream | 528808 | 56998428 ~ 57002561 (+) |
| G725124 | NA | non-coding | upstream | 22828 | 56442697 ~ 56442907 (+) |
| G724892 | NA | non-coding | upstream | 96477 | 56369042 ~ 56369258 (+) |
| G724872 | NA | non-coding | upstream | 129383 | 56336058 ~ 56336352 (+) |
| G724830 | NA | non-coding | upstream | 234356 | 56228250 ~ 56231379 (+) |
| G724764 | NA | non-coding | upstream | 250708 | 56203236 ~ 56215027 (+) |
| G725141 | LOC106568888 | non-coding | downstream | 55502 | 56525122 ~ 56525882 (+) |
| G725158 | NA | non-coding | downstream | 68821 | 56538441 ~ 56538926 (+) |
| G725157 | NA | non-coding | downstream | 69660 | 56539280 ~ 56544373 (+) |
| G725177 | NA | non-coding | downstream | 75110 | 56544730 ~ 56545083 (+) |
| si:ch211-267e7.3 | LOC106568906 | other | upstream | 747498 | 55710156 ~ 55724271 (+) |
| LOC110530939 | LOC106568914 | other | upstream | 1005615 | 55457870 ~ 55461071 (+) |
| LOC110530153 | LOC106568927 | other | upstream | 1329104 | 55120291 ~ 55136638 (+) |
| LOC118965528 | LOC106568937 | other | upstream | 1795621 | 54557953 ~ 54670115 (+) |
| rps28 | NA | other | upstream | 2537776 | 53926018 ~ 53927959 (+) |
| G725573 | NA | other | downstream | 513950 | 56983570 ~ 56984285 (+) |
| LOC110530213 | LOC106568871 | other | downstream | 999252 | 57421244 ~ 57478855 (+) |
| G725878 | NA | other | downstream | 1043986 | 57513606 ~ 57515394 (+) |
| G725907 | LOC106581475 | other | downstream | 1085103 | 57554723 ~ 57555482 (+) |
| LOC118965533 | NA | other | downstream | 1383392 | 57850799 ~ 57854417 (+) |
