LOC110530188 (LOC106568889)


Basic Information

Item Value
gene id LOC110530188
gene name LOC106568889
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56487054 ~ 56509308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613056.2
CAACCTCATTATTATTTTTCATATGGCTTTTATTTTTGCAATGTGGCTAAACAAACTCTGAAAACCGGAAGTTTTGAAATAGTGCCGCTTGTGTGACACGCGCGTAGTAGAAAGACGGATGGGGATTCCTGATCACACAAGCAAGCTATCAAGTGTGTCAGAAGATGAGTTCTCAACAATATCCACGGCCGGGAATACCTCCTGGTATGGGACCAAACCAGACTCCTGGAGGAAACACTGCATTGCTGTCTGGTAGTCAACCAAACACGGCAGGAGGGGCAGACGATAGGAACCGTGACCCTCACCCAGACCACGGTCCTCGTGACCACCCCAACAGTGGTGGTGGAGCATCAACCTTCAGGGACGACAAGCAGGAGACAGTGGTGGTCCGGCCTTACCCCCAAGCTCAGGTCCATGGACCCCCCCAGGGTCACCCCACTCCAGCAGGTCACCTGTCACTCCAGCAGGGCATGCCTGTCACAGTGTCAGCCCCTCCTCCACACATCCCCCAGGGCCTGCCTCTGGCATTCACTGAAGGACCCATGAAGccaGCTCTGAAGTCGCCCATGGCCGGTCGAGTGATCGCCCCAGCACCAGCCAACACCCAGGGTCACATCACCCTGCCACCTAAGGTGCCAAGCCACGTCACTGCAACCATGGAGAGCACCGTGCCTCAGACCGCTGGCATCCCTGTAGCAACTATCAGTGGCCAACAGGGCAAACCCAGTAACCTGCACCATCACCTGATGACGACCAATGTGCAGATCATTCGCAGCCATGCACCGCCCCTGCAGCTCGGCTCCCCTGGAGCCCCCCAGCACACCTTCACCTCCCATCTACCCAGAGGAGCTGCTGCAGCTGCTGTGATGTCCAGTTCCAAAGGACCCACAGTACTGAGACCTGCTACTGGCCCCGGTGGTGGCACTGGCCCACCTACTGTCCAGCACATCATCCACCAGCCCATCCAGTCCCGCCCTGTAGTCACAACGTCCACAGCTGTGATGCCCACGGTGGTTGCCCCATTAACGGCCACCAGGCCTCAGTCCCCAGTGGTTAGCTCAGCCACGCACTCCGCAGAGATGGTTCATGGGCGTCCAGGACTAAATATCCACCCGCCTTCAGCCACTCTGAGCATTCAGCGTCAACCCCCATCTCGGGACAACCCCACACGCATCACCCTGCCCTCCCACCCTGCCATTGGGGGTCAGAAACCCCAGCTGCCCCACACCATGGCACAGAAGCCCATATTCAGCAATGTGACTCCTGTTGCTGCTGCAACTGTTGCCCCCATATTAGCCACCAATACTGCTCCATCGCCTAGCACTACAGGCTCCGGACCCCACCCCCAAATGACCAACAGTAACATCGTCACCATGACGATGACTTCTCATTCCTCCCACGCTACAGCAGTCACCACGTCCAACATCCCCGTGGCTAAAGTGGTTCCCCAGCCGATAGCCCACACCTCGCCCAGGATCCAGCCGGAGTACCCCGGAGAGAGGGGAAACCTGATCCCCATCTCTGGTCACCGCTCCTCCCCCAACCCCATCACCATGGAGGCCCGCAATGACAACAGGCAATCGGTGCCAGTGCAGTTCCAGTACTTCCTGCCTACCTACCCTTCTTCACCGTTCCCCCTGACACACACCTACACCCCCATCACCAGCTCTGTGTCCACCATCCGACAGTACCCAGTAACCCCTCAGGCCCCCAGCGGCACGGCCATGCAGACCCAGACGAGTGTGGGCGTGGCGTCGGCGGTGCACCTCAACCCCATGCAGCTGATGACGGTGGACCGCATCGCTCAGATCAACACGCAGAACATCCAGCCTGCCGGCATGGCCACGCAGGGCATCCAGCCAACCACCATCAGCGCCCAGGGCTTGCACGCCGCCACCGGTCAGATCACCGCACAAAACATCCAACCGGCACCCATCAACCCACAACAGCCAGCCAATGAGAACAAGACCTCTATTGTGTTAGCAGACGGCACCACTCTGGTAACCAACCCCATCGGCCAGACGTTCGGCGGCAGCCAGCCTCCCACCTCTGTGGGTCAGACACACCCTCAAAACACTGGGCCTGGTGCCCCCACCCTGGTGTCCTCTCCCCGACCTAGCATCCTACGTAAGAAGCCTGCCAACGAGGGCTCTGCAGTGAGGAAGAACCTGATCCCAGAGGCCAACAGCCCCAGGATAGACGGAGGAATCAGGCATGCATCAGGGTTTCCACGCCCAGCAGGTGTGAAACACAAGCCTGATCTCCACGTGTCCCTGGCTCCCGCGGTGATGTCATCATCCATGGAGGCTCTGCCCAGCCATCAGACCAATGAACACCAGCAGCATCCCGGAGCCCCGCCCCACCAGCAACCCTCTCAGCCAATCCAGACGCTCCTCTCAGTGTCAGCACCCCCACACTCACAGCCTGGCCCCGCCCTGTCCGCCATCACTCCACCAATCTTGTCTATGGCCAACGTGGTTGTTCCGCCTACCCAGTCAGCGGCCAGTAGCACGGCGGCATGTGGAATAAGCTCCACCCTCCCTGAGATCAAGATAAAGCAGGAGGTGGAGGCCATGGATACCTCCAAACCAGGTCCCCCCATGCCCCATTGTGGTACCCCCTTGTTGTCTATGATGCCCAGTGGGGATGTGACCCCCGGGGCCTCACCCAGGAAGAAGCCCCGGAAGCAGCAGCATGTCATCTCCACGGAAGAGAGCGAGATGATGGAGACCAACAGCACGGACGAGGAGAAGGTCCTAGCCAGACCCCTCAGCATGAGGGCCGAGAAACGCAAGTCGCCCCTCAAGGAGTACATAGATGAGGAAGGGGTGCGTTATGTCCCCACCCGTGCTCGCCCCCCGGTCACGCTCCTCCGCCACTACAGGAACCCCTGGAAGGCTGCCTATCACCACTTCCAGAGATACAGTGACATCCGGGTCAAAGAGGAGAAGAAGGGCACCCTGCAGGACGTAGCCAATCAGAAAGGGGTGGTGTGCAGAGCGCAGGGCTGGAAGATGCACCTGTGTGCTGCACAGCTCATGCAGCTGACTAATCTGGAGCATGACGTGTACAGCCGCCTCACGACCCTCCAAGAGGGTCTGATCCCAAAGAAGAAGGCCGGGTCGGATGATGACCTGCACCGTATCAATGAGCTCATACAGGGTAACATGCAGCGCTGTAAGCTGGTGATGGACCAGATCACTGAGGCTAGAGACACCATGATGAAGGTGCTGGACCACAAGGAGAAAGTCATGAAGCTAATCAACAAGAACGGTGGAGCCAAGAAAGTCAACAAGCTGAAGCGCAAGGACAAAGCCTAGAACAGAGGTGGGAAAACCAAGCCTAGGCTGACCCCCTGTACCCTTCTCTTTTTGAAGGCCGCACTAGTCTACACCCCTCACTGATCTGACCATGGTTTGACCATGGACAACTGGCAGATTGTGGCAGTATGGTGTCTGGGGTAACTTGTTAGCTGTGCGTGACCGTCCAACCACTCTTGACCTAGAACTGTGACCTAGAACTGAGACACAAGTGGTCGGCAGAAGGAACAGATACAGTTCCACTATGTCCCAAGTGGGGAGCTTGTCAACGGACCGGAATGTACAAGTATTAAGACTGCTTCAGGAAGCTGGTATGTCCTCAGTTGTTGATTGGATGGCGGGTAGAATTATTATGATTTGATTGGTTGAATGATGGTCTAGAGGGGATGCATTATGTTGAATTAATACCCTTGAACATTGTGTGGTGTAAAGCATTGATATGGGTTGTTGAACTATCATCAAGTACTTATTACGTAATAAATGTGTAAATCTGTACAATGTATTTATCCTTACTTCACTCTGGTAATGGGATCAAATCAGAAGTGTGCTACCAAGTGCAGTCATTGGAAATGTCACTCTACGGTCCAAATGAAGAGTTTTGTATATCACAGTATTCCACAAATATATATATGTCAAATACTTTGTCATGTGCTTGTTTTAGCTTTGAGTTAGCTGTCTGGCAAACTGAATCAAGTACAGCTTACGTATTTGACCCCAGGTTCAACGTAGTAATCTCTAAGTAAAGATTGTAAAAGAAAGTGCAACTGTCATCTCTTCTATACCTTTCACTGAGTACGTGTTACTCTATTTGGGACAAAATATTTAAGGGATGCCTTTTCTACTGCTATCAGTAGCTGAGTGTACAATGTCTGTACAAATATAGGGACAATGTACTTTAGGGGGCTTCAGTTTGGAATGTTGTACAAGTATTCTTCTTGGTTTGTGGGCAAAGGGAAAGACACTAAAACTGCAACAGTGTTATTCATGtcagtctgacatttcaaatgaaGACATGACTACCTTTTTGATGCATCCCCTAATCAATCATACAGGATCAGACCGGAAGAGACGAAGCGAGAGGTTTTACTCCGCCCAATAACTTTCCACGAAAATAAGCCCACAAAGTGAGgaatttttgtatggaggtcaatgagtgtcgaatttgatcaacaaaaaatgtaactAATTAGctacgtgaggcttatttgattgaATATAAGTTTTGCAATGATAAGGTTCTTACGAATGCACTGACGTAAGTGGATTCTCGTGACATTACGGCAACTTcggaaaatataaataaatagctTATATCGGAGTTGTGCCTGCTGTTATAGAGAGAGATGTAGTACTTATCATGGGTATCAcctgttttagcatggacattgcaattgagggcttccaccattttaaagtagtcaactgggtggggatttctgagttgggagcaatcaactaatgaagaaaatgtactactttaaaatggagatgtaACCCTgatgctataatggcacagatacaaagatgagtcctccaTCTCTATGGCCTGCTGTTCAAATCCGCATCTGccctcattggctagaatggtcccacctgatcgcGCCTCGTTctgcctgccttccatctttTGAGAACATGTATTTCCATGAGAGTGGTTACTCCATGAGTCTACAGTACCTAAAAGTTGAATAAGGATAGATCTGTTGTCCTCAGTCGCTACATGTCtattgtctattaatgttctaatTCTAAGTAAGCATGCAAAATATTGCTAGACAGTCAATGAGGAGTGTCTCGTTATAGAGTTATTTGCTGTTCTTTTAAATGTAAATGGACATGggtttgttttttttaaccaatATGAACTGTGAATATACAAGTATACCCACTCATCAAAAGTGACGCTAATATTTGACGCCTTTTGGTGTATGGTAGTTGATTACATCAATACAAGGTCATCTGTAGCTTCTGAACAACCTTCAGTGGCAGGAAGGTTATTTTGTGCTTTTTTTTGTATGCCATATCTTGTTGATTCTGTATAGTATCAACTATGTTTTGATAAAATATGGAGTAAGAACTGTAtgaaaccaggtgaaattgtgcgTCCATAGGCTTATATTGTGCATATGCACACAATGTACAGTATCTATACATTCTTTAATGTTGTATGTGTAAAAATAAGTAGATTTTGTTGATTAAATggacttttttttgttgttttgttttttttgacCAAGCAGGTTTGCTAGtgtatttttcatttattttactaTGCGTTGTAGCTTATGGTGAATGTGTATTACATGCAGTTGGGTCTAGATTATTACATTCTGTCTGTTGGTTTTGCCATTCCCCATCACTGCAATAAAGACACTTTGTACTA

Function

NR:

description
histone deacetylase complex subunit SAP130-like

GO: NA

KEGG:

id description
K19192 SAP130; histone deacetylase complex subunit SAP130

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613056.2 True 5703 mRNA 0.50 19 56487054 56509308
Loading

Neighbor

gene id symbol gene type direction distance location
tf tf coding upstream 17434 56465735 ~ 56469620 (+)
LOC110530187 cnn3 coding upstream 62461 56404784 ~ 56424593 (+)
LOC118965531 NA coding upstream 182044 56293592 ~ 56305010 (+)
LOC110530943 LOC106568897 coding upstream 236859 56113954 ~ 56250195 (+)
LOC110530182 NA coding upstream 411623 56069979 ~ 56075431 (+)
LOC110530195 LOC106568885 coding downstream 49038 56558346 ~ 56575547 (+)
tyw3 tyw3 coding downstream 92590 56601898 ~ 56604165 (+)
lhx8a lhx8 coding downstream 154541 56663849 ~ 56667934 (+)
LOC110530204 LOC106569008 coding downstream 489120 56998428 ~ 57002561 (+)
LOC110530206 LOC106599164 coding downstream 536472 57045780 ~ 57079445 (+)
G725124 NA non-coding upstream 44147 56442697 ~ 56442907 (+)
G724892 NA non-coding upstream 117796 56369042 ~ 56369258 (+)
G724872 NA non-coding upstream 150702 56336058 ~ 56336352 (+)
G724830 NA non-coding upstream 255675 56228250 ~ 56231379 (+)
G724764 NA non-coding upstream 272027 56203236 ~ 56215027 (+)
G725141 LOC106568888 non-coding downstream 15814 56525122 ~ 56525882 (+)
G725158 NA non-coding downstream 29133 56538441 ~ 56538926 (+)
G725157 NA non-coding downstream 29972 56539280 ~ 56544373 (+)
G725177 NA non-coding downstream 35422 56544730 ~ 56545083 (+)
si:ch211-267e7.3 LOC106568906 other upstream 768817 55710156 ~ 55724271 (+)
LOC110530939 LOC106568914 other upstream 1026934 55457870 ~ 55461071 (+)
LOC110530153 LOC106568927 other upstream 1350423 55120291 ~ 55136638 (+)
LOC118965528 LOC106568937 other upstream 1816940 54557953 ~ 54670115 (+)
rps28 NA other upstream 2559095 53926018 ~ 53927959 (+)
G725573 NA other downstream 474262 56983570 ~ 56984285 (+)
LOC110530213 LOC106568871 other downstream 959564 57421244 ~ 57478855 (+)
G725878 NA other downstream 1004298 57513606 ~ 57515394 (+)
G725907 LOC106581475 other downstream 1045415 57554723 ~ 57555482 (+)
LOC118965533 NA other downstream 1343704 57850799 ~ 57854417 (+)

Expression

LOC110530188(LOC106568889) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC110530188(LOC106568889) Expression in each Bioproject

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LOC110530188(LOC106568889) Expression in each Sample
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Co-expression Network