lhx8a (lhx8)


Basic Information

Item Value
gene id lhx8a
gene name lhx8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56663849 ~ 56667934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613076.2
AAACATTCGGCTACAGTAGTAGCTGTAAGATATACACCAGGCGTAAATGGGCTGTTAAATTTAGTTCCAATTTCTTTTTACGTTTGGCAGCCTACTGTGAAATGGGAATTAATCACGAGCGTTTTATCCAGGAAGATTGTTGCATATGTCCCCCCCCAAAAGATCAAAGGTTACATCGAAATACTTGCCCTATGGATAACATGTCATATCCACTACAAGGCGGGCATGTGGTAAAGGAGGTGCGGCCAAGACCGTCATAATGAAAATGGAGAGGGAAAAAGCTACACCCTCAGTAATGTAAAGACCGCTTTCAGTGGAGCATGGTTGGTGCAGCAGCCTCTGACACTGGGCTATATCGGATTATTCTCCTGGTCGATTTGTTTTAGGACTACAAGTAATGTATTGGAAAAGTGAACTAATGTTGGCTTGCTCCAAGGTGGACGATATTGAAAATGGGTTCAACTCAATTTCCAACACCACGGGCACCTCGGAAGACATTTTTGAAGACGAGTCATATTCACCGTCATCGTCTTTGTCGTCATCCTCGACACTGCAGACGATGGCATCAGCCTCTCTGGGGAAAAGCCTTTGTGCAAGTTGTGGTTTGGAGATAGTTGACAAATACCTGCTCAAGGTGAACAACTTGTGCTGGCACGTGAAGTGCCTCTCGTGCAGCGTGTGCCAAACTCCTCTTGGAAGGCATGTCAGTTGTTACATCAAAGAGAAAGAGGTTTTCTGCAAACTCGACTACTTCAGGAAGTATGGAACTCGCTGCGCCCGTTGTGGCAGGAACATCCACTCCAACGACTGGGTAAGGAGGGCGAAGGGCAACACCTACCACCTGGCCTGCTTTGCCTGCTTCTCCTGCAAGCGCCAGCTCTCCACGGGGGAAGAGTTTGccctggtggaggagagggtgcTGTGCCGCATCCACTACGACTGCATGCTGGACAACCTGAAACAGGCCATGGAAAGTGGAAAAGGTGTGAATGTAGAGGGAGCCCTACCGTTAGAGCAAGAAGGGTCCCAGGCCAAACCAACTAAGAGGGCTCGCACTAGCTTCACTGCAGACCAGCTACAGGTGATGCAGGCTCAGTTTGCTCAGGACAACAACCCGGATGCTCAGACCCTCCAGAAGCTGGCAGAGAGGACTGGTCTCAGTCGCAGGGTCATCCAGGTTTGGTTCCAGAACTGCCGAGCTCGTCATAAGAAGCACGTGAGCCCCAACCACCACATGTCGTCCGCAGCAATGTCATCGCTACAGCAGTCCAGGCTCTCTCCGCCTCTCCTGGATGATCTCCAGTACACAGCTTACATACCAACAGACACACCCATGCACACGCCCATGCTTACCGCACTGCACACATACATGGATGTGCACTCTCCATCCTCACTGGTGTTCCAGCCTATTATGTCCCATTCCATGACACAGCTGCCAATCAGCCATGCCTGATCGTTATATTCCACCCCCTGCAGAACCGGGTCAGAATGCTGTGGAGCGATACTCACCGTCCATCAAAGGGTGTGGGGCACCTACATTAAATTATTTGAGGGTTTATCGAAGGAGATCCAATGGTCAGAATTTAATGTAAAATAAGGAGGTTAATTTCTAAACTTTTtgttaatatatatatagtatctatattGGTTATGAAATTTCATATTTAATTTATTTGATGCATGTGACAGCACTTTGTTTAAAGTAATGAAATGATTTGATATATTAAGTTTCTATTTTGTCGCTGATATATAGCTGAGCTCTGTTTTTGATGGCTGTGAAGAAATACTGAATAAAAGCCATATGATCACTGCT
>XM_021613075.2
AACATTCGGCTACAGTAGTAGCTGTAAGATATACACCAGGCGTAAATGGGCTGTTAAATTTAGTTCCAATTTCTTTTTACGTTTGGCAGCCTACTGTGAAATGGGAATTAATCACGAGCGTTTTATCCAGGAAGATTGTTGCATATGTCCCCCCCCAAAAGATCAAAGGTTACATCGAAATACTTGCCCTATGGATAACATGTCATATCCACTACAAGGCGGGCATGTGGTAAAGGAGGTGCGGCCAAGACCGTCATAATGAAAATGGAGAGGGAAAAAGCTACACCCTCAGTAATGTAAAGACCGCTTTCAGTGGAGCATGGTTGGTGCAGCAGCCTCTGACACTGGGCTATATCGGATTATTCTCCTGGTCGATTTGTTTTAGGACTACAAGTAATGTATTGGAAAAGTGAACTAATGTTGGCTTGCTCCAAGGTGGACGATATTGAAAATGGGTTCAACTCAATTTCCAACACCACGGGCACCTCGGAAGACATTTTTGAAGACGAGTCATATTCACCGTCATCGTCTTTGTCGTCATCCTCGACACTGCAGACGATGGCATCAGCCTCTCTGGGGAAAAGCCTTTGTGCAAGTTGTGGTTTGGAGATAGTTGACAAATACCTGCTCAAGGTGAACAACTTGTGCTGGCACGTGAAGTGCCTCTCGTGCAGCGTGTGCCAAACTCCTCTTGGAAGGCATGTCAGTTGTTACATCAAAGAGAAAGAGGTTTTCTGCAAACTCGACTACTTCAGGAAGTATGGAACTCGCTGCGCCCGTTGTGGCAGGAACATCCACTCCAACGACTGGGTAAGGAGGGCGAAGGGCAACACCTACCACCTGGCCTGCTTTGCCTGCTTCTCCTGCAAGCGCCAGCTCTCCACGGGGGAAGAGTTTGccctggtggaggagagggtgcTGTGCCGCATCCACTACGACTGCATGCTGGACAACCTGAAACAGGCCATGGAAAGTGGAAAAGGTGTGAATGTAGAGGGAGCCCTACCGTTAGAGCAAGAAGGGTCCCAGGCCAAACCAACTAAGAGGGCTCGCACTAGCTTCACTGCAGACCAGCTACAGGTGATGCAGGCTCAGTTTGCTCAGGACAACAACCCGGATGCTCAGACCCTCCAGAAGCTGGCAGAGAGGACTGGTCTCAGTCGCAGGGTCATCCAGGTTTGGTTCCAGAACTGCCGAGCTCGTCATAAGAAGCACGTGAGCCCCAACCACCACATGTCGTCCGCAGCAATGTCATCGCTACAGCAGTCCAGGCTCTCTCCGCCTCTCCTGGATGATCTCCAGTACACAGCTTACATACCAACAGACACACCCATGCACACGCCCATGCTTACCGCACTGCACACATACATGGATGGTGAGCAAAGTCGACACTTGGAGATCACAGTGCACTCTCCATCCTCACTGGTGTTCCAGCCTATTATGTCCCATTCCATGACACAGCTGCCAATCAGCCATGCCTGATCGTTATATTCCACCCCCTGCAGAACCGGGTCAGAATGCTGTGGAGCGATACTCACCGTCCATCAAAGGGTGTGGGGCACCTACATTAAATTATTTGAGGGTTTATCGAAGGAGATCCAATGGTCAGAATTTAATGTAAAATAAGGAGGTTAATTTCTAAACTTTTtgttaatatatatatagtatctatattGGTTATGAAATTTCATATTTAATTTATTTGATGCATGTGACAGCACTTTGTTTAAAGTAATGAAATGATTTGATATATTAAGTTTCTATTTTGTCGCTGATATATAGCTGAGCTCTGTTTTTGATGGCTGTGAAGAAATACTGAATAAAAGCCATATGATCACTGCT

Function

symbol description
lhx8 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in forebrain neuron development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within animal organ development and learning or memory. Predicted to be located in female germ cell nucleus. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
LIM/homeobox protein Lhx8-like isoform X1

GO: NA

KEGG:

id description
K09375 LHX6_8; LIM homeobox protein 6/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613076.2 False 1813 mRNA 0.47 8 56663849 56667934
XM_021613075.2 True 1842 mRNA 0.47 8 56663850 56667934

Neighbor

gene id symbol gene type direction distance location
tyw3 tyw3 coding upstream 59684 56601898 ~ 56604165 (+)
LOC110530195 LOC106568885 coding upstream 88302 56558346 ~ 56575547 (+)
LOC110530188 LOC106568889 coding upstream 154541 56487054 ~ 56509308 (+)
tf tf coding upstream 194229 56465735 ~ 56469620 (+)
LOC110530187 cnn3 coding upstream 239256 56404784 ~ 56424593 (+)
LOC110530204 LOC106569008 coding downstream 330494 56998428 ~ 57002561 (+)
LOC110530206 LOC106599164 coding downstream 377846 57045780 ~ 57079445 (+)
LOC110530207 ttpa coding downstream 413612 57081546 ~ 57086615 (+)
asph LOC106568874 coding downstream 440269 57108203 ~ 57130512 (+)
car8 car8 coding downstream 671651 57339585 ~ 57361813 (+)
G725340 NA non-coding upstream 24224 56639328 ~ 56639625 (+)
G725308 NA non-coding upstream 49455 56613962 ~ 56614394 (+)
G725293 NA non-coding upstream 55216 56608489 ~ 56608633 (+)
G725199 NA non-coding upstream 64138 56599466 ~ 56599711 (+)
G725194 NA non-coding upstream 70667 56592883 ~ 56593182 (+)
G725362 NA non-coding downstream 420 56668354 ~ 56669891 (+)
G725438 NA non-coding downstream 111397 56779331 ~ 56779681 (+)
G725440 NA non-coding downstream 112965 56780899 ~ 56781196 (+)
G725411 NA non-coding downstream 115513 56783447 ~ 56784547 (+)
G725554 NA non-coding downstream 287041 56954975 ~ 56955181 (+)
si:ch211-267e7.3 LOC106568906 other upstream 945612 55710156 ~ 55724271 (+)
LOC110530939 LOC106568914 other upstream 1203729 55457870 ~ 55461071 (+)
LOC110530153 LOC106568927 other upstream 1527218 55120291 ~ 55136638 (+)
LOC118965528 LOC106568937 other upstream 1993735 54557953 ~ 54670115 (+)
rps28 NA other upstream 2735890 53926018 ~ 53927959 (+)
G725573 NA other downstream 315636 56983570 ~ 56984285 (+)
LOC110530213 LOC106568871 other downstream 800938 57421244 ~ 57478855 (+)
G725878 NA other downstream 845672 57513606 ~ 57515394 (+)
G725907 LOC106581475 other downstream 886789 57554723 ~ 57555482 (+)
LOC118965533 NA other downstream 1185078 57850799 ~ 57854417 (+)

Expression


Co-expression Network