Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110530204 |
| gene name | LOC106569008 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 56998428 ~ 57002561 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| cholesterol 7-alpha-monooxygenase-like |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | molecular_function |
| GO:0004497 | monooxygenase activity | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| id | description |
|---|---|
| K00489 | CYP7A1; cholesterol 7alpha-monooxygenase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021613081.2 | True | 2343 | mRNA | 0.48 | 6 | 56998428 | 57002561 |
56,993,000
56,994,000
56,995,000
56,996,000
56,997,000
56,998,000
56,999,000
57,000,000
57,001,000
57,002,000
57,003,000
57,004,000
57,005,000
NC_048572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| lhx8a | lhx8 | coding | upstream | 330494 | 56663849 ~ 56667934 (+) |
| tyw3 | tyw3 | coding | upstream | 394263 | 56601898 ~ 56604165 (+) |
| LOC110530195 | LOC106568885 | coding | upstream | 422881 | 56558346 ~ 56575547 (+) |
| LOC110530188 | LOC106568889 | coding | upstream | 489120 | 56487054 ~ 56509308 (+) |
| tf | tf | coding | upstream | 528808 | 56465735 ~ 56469620 (+) |
| LOC110530206 | LOC106599164 | coding | downstream | 43219 | 57045780 ~ 57079445 (+) |
| LOC110530207 | ttpa | coding | downstream | 78985 | 57081546 ~ 57086615 (+) |
| asph | LOC106568874 | coding | downstream | 105642 | 57108203 ~ 57130512 (+) |
| car8 | car8 | coding | downstream | 337024 | 57339585 ~ 57361813 (+) |
| LOC110530213 | LOC106568871 | coding | downstream | 418683 | 57421244 ~ 57478855 (+) |
| G725577 | NA | non-coding | upstream | 7733 | 56990471 ~ 56990695 (+) |
| G725554 | NA | non-coding | upstream | 43247 | 56954975 ~ 56955181 (+) |
| G725411 | NA | non-coding | upstream | 213881 | 56783447 ~ 56784547 (+) |
| G725440 | NA | non-coding | upstream | 217232 | 56780899 ~ 56781196 (+) |
| G725438 | NA | non-coding | upstream | 218747 | 56779331 ~ 56779681 (+) |
| G725581 | NA | non-coding | downstream | 123 | 57002684 ~ 57002920 (+) |
| G725585 | LOC106568875 | non-coding | downstream | 5582 | 57008143 ~ 57025389 (+) |
| G725615 | NA | non-coding | downstream | 134271 | 57136832 ~ 57142701 (+) |
| G725809 | NA | non-coding | downstream | 405513 | 57408074 ~ 57408412 (+) |
| G725818 | NA | non-coding | downstream | 415796 | 57418357 ~ 57418677 (+) |
| G725573 | NA | other | upstream | 14143 | 56983570 ~ 56984285 (+) |
| si:ch211-267e7.3 | LOC106568906 | other | upstream | 1280191 | 55710156 ~ 55724271 (+) |
| LOC110530939 | LOC106568914 | other | upstream | 1538308 | 55457870 ~ 55461071 (+) |
| LOC110530153 | LOC106568927 | other | upstream | 1861797 | 55120291 ~ 55136638 (+) |
| LOC118965528 | LOC106568937 | other | upstream | 2328314 | 54557953 ~ 54670115 (+) |
| G725878 | NA | other | downstream | 511045 | 57513606 ~ 57515394 (+) |
| G725907 | LOC106581475 | other | downstream | 552162 | 57554723 ~ 57555482 (+) |
| LOC118965533 | NA | other | downstream | 850451 | 57850799 ~ 57854417 (+) |
| G727161 | NA | other | downstream | 1354478 | 58357039 ~ 58358245 (+) |
