Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110530206 |
| gene name | LOC106599164 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 57045780 ~ 57079445 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| xenotropic and polytropic retrovirus receptor 1 homolog |
| id | description |
|---|---|
| K24195 | XPR1, PHO1; xenotropic and polytropic retrovirus receptor 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036985763.1 | True | 7163 | mRNA | 0.47 | 14 | 57045780 | 57079445 |
57,032,000
57,036,000
57,040,000
57,044,000
57,048,000
57,052,000
57,056,000
57,060,000
57,064,000
57,068,000
57,072,000
57,076,000
57,080,000
57,084,000
57,088,000
57,092,000
57,096,000
57,100,000
NC_048572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110530204 | LOC106569008 | coding | upstream | 43219 | 56998428 ~ 57002561 (+) |
| lhx8a | lhx8 | coding | upstream | 377846 | 56663849 ~ 56667934 (+) |
| tyw3 | tyw3 | coding | upstream | 441615 | 56601898 ~ 56604165 (+) |
| LOC110530195 | LOC106568885 | coding | upstream | 470233 | 56558346 ~ 56575547 (+) |
| LOC110530188 | LOC106568889 | coding | upstream | 536472 | 56487054 ~ 56509308 (+) |
| LOC110530207 | ttpa | coding | downstream | 2101 | 57081546 ~ 57086615 (+) |
| asph | LOC106568874 | coding | downstream | 28758 | 57108203 ~ 57130512 (+) |
| car8 | car8 | coding | downstream | 260140 | 57339585 ~ 57361813 (+) |
| LOC110530213 | LOC106568871 | coding | downstream | 341799 | 57421244 ~ 57478855 (+) |
| LOC110530217 | LOC106568867 | coding | downstream | 478583 | 57558028 ~ 57572376 (+) |
| G725585 | LOC106568875 | non-coding | upstream | 20391 | 57008143 ~ 57025389 (+) |
| G725581 | NA | non-coding | upstream | 42860 | 57002684 ~ 57002920 (+) |
| G725577 | NA | non-coding | upstream | 55085 | 56990471 ~ 56990695 (+) |
| G725554 | NA | non-coding | upstream | 90599 | 56954975 ~ 56955181 (+) |
| G725411 | NA | non-coding | upstream | 261233 | 56783447 ~ 56784547 (+) |
| G725615 | NA | non-coding | downstream | 57387 | 57136832 ~ 57142701 (+) |
| G725809 | NA | non-coding | downstream | 328629 | 57408074 ~ 57408412 (+) |
| G725818 | NA | non-coding | downstream | 338912 | 57418357 ~ 57418677 (+) |
| G725869 | LOC106568870 | non-coding | downstream | 421088 | 57500533 ~ 57503590 (+) |
| G725872 | LOC106568870 | non-coding | downstream | 427216 | 57506661 ~ 57507160 (+) |
| G725573 | NA | other | upstream | 61495 | 56983570 ~ 56984285 (+) |
| si:ch211-267e7.3 | LOC106568906 | other | upstream | 1327543 | 55710156 ~ 55724271 (+) |
| LOC110530939 | LOC106568914 | other | upstream | 1585660 | 55457870 ~ 55461071 (+) |
| LOC110530153 | LOC106568927 | other | upstream | 1909149 | 55120291 ~ 55136638 (+) |
| LOC118965528 | LOC106568937 | other | upstream | 2375666 | 54557953 ~ 54670115 (+) |
| G725878 | NA | other | downstream | 434161 | 57513606 ~ 57515394 (+) |
| G725907 | LOC106581475 | other | downstream | 475278 | 57554723 ~ 57555482 (+) |
| LOC118965533 | NA | other | downstream | 773567 | 57850799 ~ 57854417 (+) |
| G727161 | NA | other | downstream | 1277594 | 58357039 ~ 58358245 (+) |
