LOC110530206 (LOC106599164)


Basic Information

Item Value
gene id LOC110530206
gene name LOC106599164
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57045780 ~ 57079445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985763.1
GACGACACAAGTACGTCACTTTCTACCCAATGATGGCGACTGAACGATTTTACAGCACAAGAGGCTAGACCCGTGTTACCACAAAAACAATATTGTCAAAGTAACAACTAAAGGCGAAATAACAGTGTATTATAGTGACAACATAGTTAAgataaaggaggagaggagcatcATCTTGCAGTTATGTTTCGGGGTTGTCCCGCCAACGTTCTCCGACCATAATGTGAGACGGAGAAAAAGGGGATCTTGGATCGAGCAGCAGTCATAATCTGGATGACAAACATTGCTCAGTGGTGATTCTGTCACATCATCCACGCTGGCTTTATTTAAAAAAGCTAGCTGTATGATATCCATTCACCACAAAGAAAGTCATCTGACAGCTAGTATTTCATCGTCGAAACCCCGGGAGGGGAACCGCTGAGGAAGGATGAAATTCACGGAGCACCTTTCGGCGCACATCACTCCTGAATGGAGAAAACAATACATCCAGTATGAgGCTTTCAAGGATATGCTGTATTCTGCCCAGGACCAGGCACCCTCTATCGAAGTCACCGACGAGGACACGGTCAAGAGGTACTACGCCAAGTTTGAGGAGAAGTTCTTTCAGACGTGTGAGAAGGAGCTGGCCAAAATCAACACATTCTACTCTGaaaAGCTAGCCGAGGCCCAGCGCCGTTTCGCCACGCTGCAGAATGAGCTGCAGTCTTCACTGGATGCCCAGCGGGAGAGCAGCATGCAGGGCCTCCGTCGCCGCCGCAAGGCCGTCTTCCACCTGTCCCAGCAGGAGCGCTGCAAACACCGCAACATCAAAGACCTGCAACTGGCCTTCTCAGAGTTCTACCTCAGTCTCATCCTGTTGCAGAACTACCAGAATCTGAACTTCACAGGTTTCCGTAAGATCTTGAAGAAGCATGATAAGATCCTGGAGACGTCGCGGGGAGCCGAGTGGCGCGTGGCCCACGTGGAGGTGGCCCCCTTCTACACCTGCAAGAAGATTACCCAGCTCATCTCTGAGACTGAGGCCCTGGTAACACaagagttggagggaggagacagacaaaGAGCCATGAAGAGACTACGAGTGCCCCCACTGGGTGCTGCACAGCCAGCTCCGGCGTGGACCACCTTTAGGGTTGGCTTGTACTGTGGCGTCTTCCTCGTCCTCATGGTCACCGTTGTCATCACTGCTGCGGTTGTGATAGAGAATGCCAACGTGTGGCCACTGGTGAGGATCTACCGCGGCGGCTTCCTGCTGATCGAGTTCCTCTTCCTGCTGGGCATCAACACGTATGGCTGGCGCCAGGCTGGGGTCAACCATGTGCTCATCTTCGAGCTCAACCCCCGCAACAACCTCTCCCACCAGCACCTCTTTGAGATTGCTGGTTTCCTGGGGGTGCTGTGGTGTGTGAGCATCCTGTCCTGTCTGTTCTCCAAGTCCATCCTGGTGCCCATGCAGGCCAACCCGCTGGTCCTCTACggcttcttcttcctcttcctcatcaacCCCTTCAAGACCCTCTACTACAAGTCACGCTTCTGGCTCCTCAAACTGCTGttCCGTGTGGTGACAGCCCCGTTCCACAGGGTAGAGTTTGCAGACTTCTGGCTGGCCGACCAGCTTAACTCTCTAGGGGTGGTTCTGATGGACCTGGAGTACCTCATCTGTTTCTACAGCTTTGAGCTCGACTGGAAGCAACAAGACGGGCTACTGCGCGACAGTGGAGGCGTGTGTCACTCGTACTCGTATGGCGTGCGGGCAGTGATCCAGTGTCTGCCGGCCTGGTTCCGCTTTGTGCAGTGCCTGCGGCGTTACCGCGACTCCAAACGGGCCTTCCCACACTTGGTCAACGCAGGGAAATACTCCACCACCTTCTTCGTGGTCACCTTTGCTGCCCTCTACAGCACCCACAAAGCTGAGCGTCATGATGACACCCAGATCTTCTTCTACCTGCTGATTGGCTGTTCATTAGTCAGTTCCTGTTACACCCTGGTGTGGGACCTGAAGATGGACTGGGGCCTGTTTGACCGCAATGCAGGAGATAACACCATACTCAGAGAGGAGATCGTCTACCCACAGAAAgcCTACTACTACTGTGCCATACTGGAGGATGTGCTGCTGCGTTTTGCCTGGACAATACCCCTCTCCCTGAGCACCGCCAGTGCACCGTCAGCTGCAGACATTGTGGCTACCATCCTAGCCCCTCTGGAGGTCTTCAGGCGTTTTGTGTGGAACTTCTTCCGCCTGGAGAACGAGCACCTGAATAACTGTGGCGAGTTCCGTGCCGTGAGGGACATCTCAGTGGCTCCGCTGAACGCTGACGACCAGACGCTGCTGGAGCAGATGATGGACCAGGAGGACGGAGTCCGGAACCGCCTGGGCAAGAAGAACTGGAAACGCTCCTACAGCGTGTCCCTGAGACGGCCACGCCTCGCTTCCCAgaccaagACCCGGGACACCAAAGTTCTCATGGAGGACACAGACGATGACACCTGACATCAGGCCAGACCCATTGCATCCATAGCATGGGTTCAGAACCTCTTTAAAGGACCACGTCCCTCCTAGGGGCatacaccccctcctcccccatcaaTCAGTCCATCAATCATTTGATGACCCGCCCCCTCATCAGTCCATCACAGAGCTGCCTATCTGCGTCAACACACAGAGTACAATGACTTGAATATAGGCGTATACAGAGGATAACAATTGGAGACAAATacaaatatcacacacacacacacacaccttggaaCAGCTACTTTTAAGCCACTTTGTTTTGTTACGTTCATGGACCATTTAGTGCTGAGTTGGCGTCACCCGTTGTTTTTTATATTTCATGGGGCATAGACAAAACACCAAGACTGTGTAAATGTTGATGTAAATATCAGGAAGAACAAACGGGGAACGGACTGTTGATTTCAAGATGGCTAATCAGAAATGATGTAATCTAAAAAAAGACTGAGAGCGTTGGACTCTGAACAGTGATCAGACACTCCTCTGCAATCAGTCTGGTCCAAGACTTTCTTATGACCTTTTTTGATGAACATGATGATGACGATTACTGTATTGATGTGGCTGTCCTTTCCATGTGTGATAAGTTCTTCCACGAATACcttggtttttattttattttgtttaatTAAATTGTTATTTATGTGAGGGGAAAGATGCCTAAAACATTTGGTAGTGAAATGGGGGAGGTTCTGGTTTGAAATGGCTGCTAAAGTGTCTGCCTAATGTTGCCCAAAAAGAACTGTTCCAAGAACTTGTTGGTAAGGGGGAGAGGAGTTTGTTCTAATGGTTCAGTATGGGTCGGTCTGAATATAAGGCTGATCGGTGCTTCAGGGCATCTCATCCTTTAAAATGACATTATGTTCAAAAACCCTCAGGAGGCTCTGATTGGACAATTCTCTTAAAACAAGCCCACCCCTTCCCGGTCTTCAGAACCTTTTATAGGGAGGGGGCCTCCCATCATTggggaacaccccccccccccatgtctatttctatgggcaaaAGCACATTCCatgacaaactgttcacaccccctTTTGTTGGCGGAGAGGATTTTGCAGtttatttcctgtaattctatACATTCTGCCATTGGGTGAAGATTTTTTGGGCCATttttaagctaatttcctgcagttTTACATATTTTGCGTGTTCATGTgatatctgagtgactcaaacattacaacaaaatcaatgggctAAAAGACCTAGCTAAAAAAACGTTAGCTGACATAgactagttgatctggacatttctgacaagttataaatagctctctgaGGTCTGCAATGACGagaggaaaactgatgatgcactacccaatttcaaaattgcaccttgtgcattcaaGAGTAATTTGAAAGCCAGACAGTTCCCCCCCCGTTATAGCGTAAATGAAAATGTAAGAACtttcttaaatgaaatcatatcatttgacaaccctgtttgtaagctttcaaatgatatcaCACTCAACCGTTTATTTTTTTCCCCAGCGATGTGGACGTCTCATGGAAGgttggggtatgcaaaatgggtcagcTTTGAGCACCTCCATCTCCTGAATGCTTtgacattcaggtccaaaaagtcactttctgaccacttccacCACGGGCAAACATGAATGAaaggttttgttcaaatcaaaaggggtgcaGTCAGAAAGTGATTGAAATCACATGGAACAACCCCTATACCAATATGGTTTAACTGTAGCATTGTCTAGGATGTCTTCTTTTTATTTACTAGTGTGAGCTAACACAGTCTCTCTCAGTAAGCCCTGGTAGGTGTGAGAATGACAGAATGTATGACTATTGCTCTTAGAGCTAGTCAAATATCTGAAACATTCCATTGAGAGCTGGGCTGTGCTTCCAAAGTGTAACGCTTCACTCAAAGCCCATTTTAtgcttgatctgaaaatgtggtcAGAGGCTCCGTATGGAGGGTGTGATGCAATTGCAGCGTCTCCGGAGACacgcagaggccaaattgagctccatACCGCCTCACCGTGAGCctcccaaattttgtaacaatgctGAGTGCTCTGTATagctacatacacacaaactcacttccttgacaacttcctttaCAACAGCTCTGCGCTGCTCCGTGGAGCGCAAGAAGTATGAACGCCCAGACTTCTGCAGAATCCGTGTCACCGTAGAAGGCTGCACGGCCAATGCAGACGTCAGATTGATCCTGCGGCACCTTTTCCTGATAATGCACAGTAGATAGAAATTCAATctatagaaaatatatttcactatTAGGGCCCTTACTTTTTCTTGGCCATGTGACAGTTTTTTTCTAGAGAAAATCACATcctaaggtgccaccagccacctgtgATCCCTACGTCTGTTCTAGACATCCTAGTTCTATATGCGATGTTGTGGTGCTTTGCGTCCACTAAGCACCACAGCCCAGGTCTCTTCTGAAAGCCCAGCTCTCTTCTATCAGTAGGGTCAATTTCCACTGACTCTGTTATAATTGGGGCCCAGTGTTTTTCCTGCTCAGGTGTCAGTTTGGAAAACTCCTGGTCCTTGCCATCCCATTAGATCGCAGGGCTGAACACCCAATGCCAgttaggagtcacgtgtatctgGGGATGTGCAGGGGTTGGCCTCTTCACCTGCCCTTAATATTAGTAGTTGTTGAATTCTGCTGAAAAACAGCATATTTCTCTGTAGCAGAAATCTAAGTCATTCCATCCagacagtttttttatttttatgttttattcCTAGCCTTGGATGTGTTCTTAGCTCGGACACTTCTCACTTTGGGGGATTTGTTGAATGTATCATTCTGTTAATAACTCCAGCCAATAAATGCAATGTGTATGCGCTCACATAAAGACTCCAAAGAGAAGGGTCTGCATTGGCTCACCTAAGGAGACGTTTCAGCTTTAAGTGTTCTGCTCTGACTGAGTAAGAACCATTTCCCAGAATCCCTCCCTTCCTAAAAGCCACCTGAGGGTTTTAACCCCCACTCTGTATAACCAGGTAGATTTACTAACACTGTAAAGATATAAGCAATCGTATAAGGCGGAATCCTAACTTGATATGCCCAGATAACTCATCTCCCATTGATATCAATGCACGATGTTCAAAGGTTTGAGTTAACCCAAGTATATCTCAGGTTAGGTTTTGGCCCATACTTCTCAAGCTGCATTTCGTAGTTCATAGATCAACTGTAATGGTGATTATGGAAAGCCTGATGGAGCTTAAATGTGGTCTAGGGGGAACTAGTCTTAAATAATGTGGTGAAGGAGAGAACCAAGAAAAGACAACATGGTGATCTATTAGTGTCTCCGTTCCAAGTAACACCTTATTGCTGATATAGTGCACAAGAAGTATCATGCTACattggactatatagggaatagggtgtcatttgcgATATACCCAGTCTTTTTATGGTTGAGCTTTCCTGTCGGCCTTGCCCAGCTCAGATGGGATTCTCCACAGAGGTCTATAGACTTGAATGGAGCTGGTGAGCAATAACGGCCATGCGTAATCCCTGTAATAAGTCTTAATAAGTGTTAAGCAATGTTTGTACCCGAGGGAGGAGGGGACCCCAGTGTCTCAGGGCAAACTGTTGATTTTCATTGGGCCTCAGTGCTTTGTAGATCAATGAGTCAATATTTAACTAGATTCCACCTCATCCGATTGTCCAATTTCTGACAAAAATAAATGATTTGCCATAAAAGTGTACCTACTTGTGCACTTTAGCTGCTATATAAGAACCATTATAGGCACCGAATAAGCGAGCGATTCATTTGTTTTTTTCCTGACGAAAACGAGAAAGATGGGGCACAACTAGTAACGAGTCACCCTGTGCGGCCTTGGGTCCCCCGCCCGTTGTTAAGATGGTGATGCCATTCtgttacattttcagatattgtgGTCTCTACAGGTCTGAAGACTGCACCTCTCTAGGTCAACCAATGGACCTAGTGGGGGAATAAGCAAATATTTACCCTTTTGTTACATTACCTAATGTAACGTCACACCCCTGAGAGAGTGATATGGAGGGCCCACACACAAAGATATTGTAAATATGCACACACTCTGAAGTGCTTACACACACCCTGCTTACAAGCATACCCTGTACACACACTTACCTTGCTTGGAGTATGATCCAGCTGATCAATGAATGCTAAGATTGGAGTAGCACTGGACCCATTCCCCTGTCGCTTCTCATTGGATCACTGAATCTCTCagagctgtcactcaaatggatCCTCCCATGGAAGAAGAGTGGAATCTACTGTAGCAAAAGCCTGGACCAAAACAAAGCTCTTTAGAATGTTTTGTGAAACGTAAACCATGTTTCCCTTATGCCTAGAACGTTATAAAGACTTAATAAAGACCCTGTATGGATTATATGAAACGGACGACCATTACATGTCCCATGTGCCCCGCGAGCGTTGTTTTATGTTTCAGTTTTTGGACATGCTCGCCCTATGTACTGTCATCGTACCCTTGTACTTCTGGTCACTGTAACTACAACCTTAAAGGAGTACTCGTCATGAGTACTCGTCGGCATTCTCTGCTAACTTAGGCGCCTGGATCGTCTCCCTGACCCTGTAATTCTGtttttgagtttaaaaaaaaaaatcaaacaaaAAAA

Function

NR:

description
xenotropic and polytropic retrovirus receptor 1 homolog

GO: NA

KEGG:

id description
K24195 XPR1, PHO1; xenotropic and polytropic retrovirus receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985763.1 True 7163 mRNA 0.47 14 57045780 57079445

Neighbor

gene id symbol gene type direction distance location
LOC110530204 LOC106569008 coding upstream 43219 56998428 ~ 57002561 (+)
lhx8a lhx8 coding upstream 377846 56663849 ~ 56667934 (+)
tyw3 tyw3 coding upstream 441615 56601898 ~ 56604165 (+)
LOC110530195 LOC106568885 coding upstream 470233 56558346 ~ 56575547 (+)
LOC110530188 LOC106568889 coding upstream 536472 56487054 ~ 56509308 (+)
LOC110530207 ttpa coding downstream 2101 57081546 ~ 57086615 (+)
asph LOC106568874 coding downstream 28758 57108203 ~ 57130512 (+)
car8 car8 coding downstream 260140 57339585 ~ 57361813 (+)
LOC110530213 LOC106568871 coding downstream 341799 57421244 ~ 57478855 (+)
LOC110530217 LOC106568867 coding downstream 478583 57558028 ~ 57572376 (+)
G725585 LOC106568875 non-coding upstream 20391 57008143 ~ 57025389 (+)
G725581 NA non-coding upstream 42860 57002684 ~ 57002920 (+)
G725577 NA non-coding upstream 55085 56990471 ~ 56990695 (+)
G725554 NA non-coding upstream 90599 56954975 ~ 56955181 (+)
G725411 NA non-coding upstream 261233 56783447 ~ 56784547 (+)
G725615 NA non-coding downstream 57387 57136832 ~ 57142701 (+)
G725809 NA non-coding downstream 328629 57408074 ~ 57408412 (+)
G725818 NA non-coding downstream 338912 57418357 ~ 57418677 (+)
G725869 LOC106568870 non-coding downstream 421088 57500533 ~ 57503590 (+)
G725872 LOC106568870 non-coding downstream 427216 57506661 ~ 57507160 (+)
G725573 NA other upstream 61495 56983570 ~ 56984285 (+)
si:ch211-267e7.3 LOC106568906 other upstream 1327543 55710156 ~ 55724271 (+)
LOC110530939 LOC106568914 other upstream 1585660 55457870 ~ 55461071 (+)
LOC110530153 LOC106568927 other upstream 1909149 55120291 ~ 55136638 (+)
LOC118965528 LOC106568937 other upstream 2375666 54557953 ~ 54670115 (+)
G725878 NA other downstream 434161 57513606 ~ 57515394 (+)
G725907 LOC106581475 other downstream 475278 57554723 ~ 57555482 (+)
LOC118965533 NA other downstream 773567 57850799 ~ 57854417 (+)
G727161 NA other downstream 1277594 58357039 ~ 58358245 (+)

Expression


Co-expression Network