LOC110530207 (ttpa)


Basic Information

Item Value
gene id LOC110530207
gene name ttpa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57081546 ~ 57086615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613084.2
CTGTACATTTGCCTTGATTTCATTAGGTCGAGAAGTACTTGAAAACAAAAGTTCACCCCTCACCACCAATAGGCTGTACAGTTGCCTTGATTTCATCATCTTTGTTGACACGTGCTTCGATTATTTGCTTAGTTGCACAGCGGTGAGTAGGGCCTAGCATAGGTGAGCCCCATGCGGGTTAAAGAGCAGAAATGATTTCAGTTGCATTCTGACTGCATGAACGGAAGTTTCTCCATTCTCCTTGacatagtttgtgtgtgtggtgggcgGGAAATGTCATACATTTCCGACATGTCTGTAAAGGAGAATTATTACGAAGGAGACCTAAATAGTTTACCCGACGACTCCAATGTTGTCCAACGTTATTTATTACAACTGAGACAGAGGGCACAGAAAGACGTCATCGACCCGCAGGACAGGTTGAATTGGTCGGACAGTTTTTTAATAAAGTTTCTGAGAGCGAGAGACTTTGATGTTGAGCTGTCACTGAAGCTACTAATTAATTACCAGCGTTGGAGGAGAGAGTGCCCAGAGATCAATGCCAACCTGCACCCGTCCTCTGTCCTGGGACTCCTCCAGAATAACTACCATGGAGTGCTGAGGGACCGGGACCTCAGTGGCAGCAGAGTGCTCATCTATAGGATAGGTCAGTGGAACCCTAAAGATTTCACAGCTTACGAGGTGTTCCGTGTCAGTCTGATCACATCTGAGCTGATCGTCCAGGAGACCGAGACCCAGAGGAATGGACTGAAGGCCATTTTCGACATGCAGGGATGGTGCTTCGCTCATGCCCTACAGATCAACTCCTCCCTGGCAAAGATGATGTCCTCTGTGCTCACGGACTCGTTTCCTCTGAAGGTGCGAGGGATCCATCTGATCAATGAGCCCATATTCTTCAGACCCGTCTTCACCATGATCCGTCCATTCCTGACTGATAAGATCAAACAGCGGATCCACATGCACGGCAGTAATTTCAAAGAGACGCTGAGTGGCTTCTTCTCCAAAGACATCCTCCCCCAGGAGTACGGGGGCAGCGGCCCCTCcatggaggaggtgtgtcagGAGTGGACCTCCCACATTCTGCAGTCTGAGGAACGCCTCACCCAGCTCTCCATCTGCCCTGCAGGAGATGAGGTCACCCCAGACCCAGAGACAGAACCTGACCCTGACAGCTAGTCTGCCTACAGCTCCTGACTACAAATGGACTACACATCCCAGAGTGCATCTCAATGACCAACCACACAACTCATAGCATCCTTCTGAAGTGGATGGGGTGCACATCTTCAGCTCTCGAGGTCCAAGATTATATGCAAGTTTACTACCAGTTTCCTGGTTATTAAGTTTGTCAGTTGATGATGGTAGGACCAAATGCTCAAGAATTGAGTACATTGTGTTTGGAATTAGACCTAGACTACTTTTCTCTATCTCCTGTTTTATGGGTTTTAAAGTATATTAGCAGTATACAGCCAACTGTCTGTTACCATGTGTTATAACTAAGACCAAGGTTAAAGATGTATGTTTTAGCTATTTGTTCAATTTTGTGAATGTCTACTGTATTAGAGACTTGTATTTTTATACTATAATTGGTGTTTTAATTATGAAGATTAAAGGtcaattccaccacttttcaacctcagcACAATGCCAACATGTGAAAACGGCACATTTCTACATTTTGTAGAAAGAAAATATAAAGTTCTAGCCGATTACATCTGAGATCCGCAGTGACGTGGGGAGCATGAAAATACCCTCCCTCTGGCTAGAAATACTTTACAAGTTTTGAAAAACACTTTTTACtctaccctgtgatgtcacaaGCTAGGTTTCTATCCAATTTGCAAGACATGTTCATGCAAATGTTATAAAATCTGCATTAAACCAATATGCACATTTTACCACCAAAGGTTTGTTTCCATCAAAACAGACTTGTTGCAGAGAGAAGGCTGtccgtgatgacgtagtgcacataaacaCTTTTGCGCTAAAGATCTCATGTAtcagattaaaaaaaacaaattcaaTGTATTTGCATTGCATTTTCCACTCTATGCATGGttttgttttgtcacacaaacttGTGATGAATGCCAAACTTGTccaatctaaaaaataaaaaaaacacctcCCAACC

Function

symbol description
ttpa Predicted to enable lipid transfer activity; phosphatidylinositol bisphosphate binding activity; and vitamin E binding activity. Acts upstream of or within central nervous system development and chordate embryonic development. Predicted to be active in late endosome. Is expressed in several structures, including eye; immature eye; liver; neural tube; and tail bud. Human ortholog(s) of this gene implicated in familial isolated deficiency of vitamin E. Orthologous to human TTPA (alpha tocopherol transfer protein).

NR:

description
alpha-tocopherol transfer protein-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K24455 TTPA; alpha-tocopherol transfer protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613084.2 True 2131 mRNA 0.44 5 57081546 57086615

Neighbor

gene id symbol gene type direction distance location
LOC110530206 LOC106599164 coding upstream 2101 57045780 ~ 57079445 (+)
LOC110530204 LOC106569008 coding upstream 78985 56998428 ~ 57002561 (+)
lhx8a lhx8 coding upstream 413612 56663849 ~ 56667934 (+)
tyw3 tyw3 coding upstream 477381 56601898 ~ 56604165 (+)
LOC110530195 LOC106568885 coding upstream 505999 56558346 ~ 56575547 (+)
asph LOC106568874 coding downstream 21588 57108203 ~ 57130512 (+)
car8 car8 coding downstream 252970 57339585 ~ 57361813 (+)
LOC110530213 LOC106568871 coding downstream 334629 57421244 ~ 57478855 (+)
LOC110530217 LOC106568867 coding downstream 471413 57558028 ~ 57572376 (+)
LOC110530216 LOC106568865 coding downstream 486036 57572651 ~ 57582193 (+)
G725585 LOC106568875 non-coding upstream 56157 57008143 ~ 57025389 (+)
G725581 NA non-coding upstream 78626 57002684 ~ 57002920 (+)
G725577 NA non-coding upstream 90851 56990471 ~ 56990695 (+)
G725554 NA non-coding upstream 126365 56954975 ~ 56955181 (+)
G725411 NA non-coding upstream 296999 56783447 ~ 56784547 (+)
G725615 NA non-coding downstream 50217 57136832 ~ 57142701 (+)
G725809 NA non-coding downstream 321459 57408074 ~ 57408412 (+)
G725818 NA non-coding downstream 331742 57418357 ~ 57418677 (+)
G725869 LOC106568870 non-coding downstream 413918 57500533 ~ 57503590 (+)
G725872 LOC106568870 non-coding downstream 420046 57506661 ~ 57507160 (+)
G725573 NA other upstream 97261 56983570 ~ 56984285 (+)
si:ch211-267e7.3 LOC106568906 other upstream 1363309 55710156 ~ 55724271 (+)
LOC110530939 LOC106568914 other upstream 1621426 55457870 ~ 55461071 (+)
LOC110530153 LOC106568927 other upstream 1944915 55120291 ~ 55136638 (+)
LOC118965528 LOC106568937 other upstream 2411432 54557953 ~ 54670115 (+)
G725878 NA other downstream 426991 57513606 ~ 57515394 (+)
G725907 LOC106581475 other downstream 468108 57554723 ~ 57555482 (+)
LOC118965533 NA other downstream 766397 57850799 ~ 57854417 (+)
G727161 NA other downstream 1270424 58357039 ~ 58358245 (+)

Expression


Co-expression Network